Skill UI

Query InterPro for protein family, domain, and GO annotations via a REST API with Python helpers, enabling function prediction, domain architecture mapping, and evolutionary classification insights for proteomic workflows.

Query the JASPAR REST API and Python helpers to retrieve TF binding profiles, convert PFMs to PWMs, and scan DNA sequences for high-confidence motifs, enabling regulatory variant interpretation, ChIP/ATAC analysis, and TF network construction.

Run OpenMM-powered molecular dynamics simulations and MDAnalysis trajectory workflows to build protein or small-molecule systems, minimize energy, equilibrate conditions, and characterize RMSD/RMSF, contacts, and free-energy surfaces for structural biology or drug studies.

Query the Monarch Initiative API to explore disease-gene-phenotype associations across species, enabling rare disease gene discovery, phenotype-to-gene mapping, and cross-species modeling via integrated HPO and model organism data.

Provide a comprehensive toolkit for RNA velocity inference in single-cell RNA-seq data, modeling unspliced/spliced kinetics to infer differentiation directions, latent time, and driver genes while complementing Scanpy pipelines.

A comprehensive toolkit for reconstructing and analyzing the evolutionary history of biological sequences (genes, proteins, genomes). The standard workflow includes multiple sequence alignment using MAFFT, robust maximum likelihood tree inference with IQ-TREE 2 and FastTree, and advanced visualization/manipulation using ETE3. This skill is essential for studies in viral phylodynamics, microbial genomics, protein family evolution, and molecular clock dating.

An AI-driven comprehensive health analysis system that integrates multi-dimensional datasets, including biometrics, lifestyle, and medical history. It excels at anomaly detection, predicting various health risks (e.g., CVD, Diabetes), providing personalized, evidence-based recommendations, and generating detailed, interactive health reports.

Provides charting, mapping, and dashboard techniques to turn datasets into clear insights for sharing across teams.

This skill provides deep analytical insights into aggregated family health data. It assesses genetic predisposition, identifies patterns of familial diseases, calculates weighted risk scores based on historical data, and generates personalized, actionable prevention recommendations. Ideal for generating comprehensive family health reports and trend analysis.

Analyzes comprehensive fitness logs to track quantitative trends in volume, intensity, and frequency. It tracks progress across multiple disciplines (running, strength) and correlates exercise metrics with vital health indicators like blood pressure and weight, providing personalized, science-backed training and recovery advice.

This skill provides comprehensive functionality for querying, comparing, and calculating nutritional data from a structured food database. Users can perform precise searches by food name or nutritional criteria (e.g., high protein, low GI). It supports calculating total nutrient intake based on specific portions, suggesting foods for various health conditions (like diabetes or high blood pressure), and performing detailed comparative analysis between multiple food items.

This comprehensive tool helps users set, track, and optimize personal health goals using deep data analysis. It validates goals against the SMART criteria (Specific, Measurable, Achievable, Relevant, Time-bound) and tracks progress by correlating diverse health data, including nutrition, exercise, and sleep patterns. Key features include habit formation analysis, motivation assessment, identifying roadblocks, and generating interactive reports with ECharts visualizations, providing a holistic view of wellness journeys.