Skills Data Science Generating Meta-Analysis Figures And Tables

Generating Meta-Analysis Figures And Tables

v20260724
psychbull-tables-figures
This skill guides the creation of standard, high-quality exhibits for meta-analysis manuscripts, specifically adhering to APA 7th edition standards required by journals like Psychological Bulletin. It generates critical figures such as PRISMA flow diagrams, forest plots, funnel plots, and summary tables, ensuring the final report is self-contained, reproducible, and scientifically rigorous.
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Overview

Tables & Figures (psychbull-tables-figures)

A meta-analysis communicates through a small set of standard, expected exhibits. Psychological Bulletin reviewers look for a PRISMA flow diagram, a forest plot, funnel/bias plots, and MARS-ready summary tables, all in APA 7th-edition format. This skill covers exhibit design; the numbers come from the analysis skills.

When to trigger

  • Building the figures and tables for the manuscript
  • A reviewer asks for the PRISMA diagram, forest plot, or a study-characteristics table
  • Making exhibits self-contained, accessible, and reproducible from the deposited scripts

The expected exhibits

  1. PRISMA flow diagram — records identified → deduplicated → screened → full-text assessed → included, with exclusion counts and reasons at each stage (matches the search log).
  2. Forest plot — each study's effect size and CI, its weight, and the pooled estimate with CI and (ideally) a prediction interval; order meaningfully (by year, effect, or subgroup).
  3. Funnel plot (contour-enhanced) and any bias-diagnostic plots (e.g., PET-PEESE regression).
  4. Moderator / meta-regression bubble plot — effect vs. continuous moderator, point size ∝ weight.
  5. Study-characteristics table — one row per study: design, n, population, measures, effect size, moderator codes — the backbone of a MARS-compliant report.
  6. Summary-of-findings table — pooled effect, CI, k, I²/τ², prediction interval, bias results.

APA 7th & accessibility

  • APA 7th table/figure format: numbered, titled, with notes defining abbreviations.
  • Self-contained: readable without the text; define every symbol and effect-size metric.
  • Colorblind-safe palettes; legible in grayscale; vector output (PDF/EPS) for print.
  • Exhibits must regenerate from the deposited scripts and match the reported numbers.

Execution bridge (StatsPAI / Stata MCP)

Generate exhibits from the fitted result, not by retyping numbers (the usual source of body-vs-supplement drift). Full map: execution-with-mcp. Psychological Bulletin is a meta-analytic review venue.

  • Tables: etable (multi-model columns) or did_summary_to_latex straight from the result_id.
  • Figures: plot_from_result / enhanced_event_study_plot / event_study_table — axis units and the SE/clustering note baked in.
  • Every note names the estimator + clustering and states the effect size in interpretable units.

See a full fitted-result → exhibit chain in the JF execution walkthrough.

Anti-patterns

  • No PRISMA diagram, or counts that don't reconcile with the search log
  • A forest plot without weights, pooled estimate, or a prediction interval
  • A funnel plot presented as proof of (no) bias on its own
  • A study table missing the inputs needed to recompute effect sizes
  • Figures that can't be regenerated from the deposited code (numbers drift from text)

Exhibit expectations at the APA review flagship

Psychological Bulletin referees scan the exhibits before the prose: a synthesis missing its standard visual vocabulary signals an immature manuscript. The decision table they apply:

Exhibit Referee expects Common desk-reject pattern
PRISMA flow Counts that reconcile to the search log and text Diagram numbers that don't add up to the reported k
Forest plot Per-study CI, weights, pooled diamond, prediction interval A bare list of dots with no pooled estimate or PI
Funnel/bias Contour-enhanced, paired with a formal test Funnel alone, captioned "no bias" — over-reading a picture
Study table One row per study, all effect-size inputs recoverable Missing ns/SDs, so effect sizes cannot be reverified
Summary-of-findings k, pooled g, CI, I²/τ², PI, bias result in one place Scattered numbers a reader must reassemble

Worked vignette — what the exhibits must show

Illustrative figures, not real data. For the k = 42, g = 0.34, I² = 68% self-affirmation synthesis above, the exhibit set this skill requires looks like:

  • PRISMA diagram: 2,310 identified → 1,640 after dedup → 1,640 screened → 188 full-text → 42 included; exclusion reasons tallied so the bottom box equals the analyzed k.
  • Forest plot: 42 rows ordered by year, each with g and CI and an inverse-variance weight; a pooled diamond at 0.34 [0.24, 0.44] and a wider prediction interval roughly [−0.10, 0.78] that visibly exceeds the CI — making the 68% heterogeneity legible at a glance.
  • Contour-enhanced funnel beside an Egger caption (p = 0.03), not standing alone as "proof."
  • Bubble plot for the delivery-format moderator, point size proportional to weight.
  • Summary-of-findings table: one line carrying k, g, CI, I², τ², prediction interval, and the trim-and-fill / selection-model sensitivity bounds.

Referee pushback → venue-specific fix

  • "Your forest plot has no prediction interval." → Add the PI band; with I² = 68% the CI alone understates the spread of true effects.
  • "PRISMA counts don't match the text." → Reconcile the diagram, the search log, and the reported k so every box is auditable.
  • "The funnel plot is presented as evidence of no bias." → Re-caption as one diagnostic among several and cross-reference the Egger/selection-model results.

Output format

【PRISMA diagram】present + reconciles with search log? [Y/N]
【Forest plot】weights + pooled + prediction interval? [Y/N]
【Funnel / bias plots】present? [Y/N]
【Study-characteristics table】MARS-complete? [Y/N]
【APA 7th + accessible】numbered, colorblind-safe, vector? [Y/N]
【Reproducible】regenerates from scripts? [Y/N]
【Next】psychbull-writing-style

Supplementary resources

Info
Category Data Science
Name psychbull-tables-figures
Version v20260724
Size 6.52KB
Updated At 2026-07-29
Language