nextflow
K-Dense-AI/scientific-agent-skills
Nextflow is a powerful workflow language and runtime for building reproducible, portable, and scalable data pipelines, especially dominant in bioinformatics. This skill covers the entire workflow lifecycle: from authoring complex pipelines using the modern DSL2 syntax, to configuring containerized execution (Docker, Singularity), scaling to High-Performance Computing (HPC) or cloud environments, and running/debugging existing nf-core workflows.