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EDGAR Data Extractor

K-Dense-AI/claude-scientific-skills

Python library for accessing SEC EDGAR filings, extracting XBRL statements, insider trading, and institutional holdings data to power financial analysis, screening, or structured data workflows across 10-K/10-Q/8-K/DEF-14A filings.

Markdown Mermaid Authoring

markdown-mermaid-writing

K-Dense-AI/claude-scientific-skills

Enforces markdown-plus-Mermaid as the canonical format for scientific docs, reports and diagrams, supplying style guides, templates and 24 diagram references so every version-controlled relationship stays text-based rather than an image.

Document Markdown Converter

K-Dense-AI/claude-scientific-skills

MarkItDown converts PDFs, Office docs, images, audio, HTML, CSV/JSON/XML, archives, and YouTube content into clean Markdown so LLMs can consume structured, token-efficient source material via CLI or Python APIs including OCR, transcription, and AI image captions.

Network Analysis Toolkit

K-Dense-AI/claude-scientific-skills

Provides Python-based tools for building, analyzing, and visualizing graph or network data, covering creation, algorithms (shortest paths, centrality, communities), generation, I/O, and rendering for domains like social, biological, or transport systems.

Opentrons Protocol Integration

opentrons-integration

K-Dense-AI/claude-scientific-skills

Provides the official Opentrons Protocol API v2 guidance for writing, loading hardware, and executing automated liquid-handling protocols on OT-2 and Flex robots, including module control, labware setup, and advanced pipetting flows.

Structured Scientific Peer Review

K-Dense-AI/claude-scientific-skills

Use Structured Scientific Peer Review to produce checklist-guided evaluations of manuscripts and grant proposals, scrutinizing methodology, statistical rigor, reporting standards, and reproducibility while offering constructive feedback for revision.

PubChem Database Query

pubchem-database

K-Dense-AI/claude-scientific-skills

Leverages PubChem’s PUG-REST API or PubChemPy to search 110M+ compounds by name, CID, or structure, fetch properties, perform similarity/substructure lookups, and access bioactivity or format conversions for cheminformatics workflows.

Hardware Agnostic Lab Automation

K-Dense-AI/claude-scientific-skills

PyLabRobot is a Python SDK that controls liquid handlers, plate readers, pumps and other lab automation devices through one unified API, ideal for multi-vendor workflows, simulations, and reproducible protocols across platforms.

Materials Structure Toolkit

K-Dense-AI/claude-scientific-skills

Pymatgen is a Python toolkit for computational materials science that creates, manipulates, and analyzes crystal structures, converts among 100+ formats, computes phase diagrams, and accesses Materials Project data for high-throughput workflows.

Qiskit Quantum Framework

K-Dense-AI/claude-scientific-skills

Bridge circuit design, optimization, visualization, and IBM Quantum execution with Qiskit. Install via pip, compose circuits, transpile for hardware, run on simulators or cloud backends, and analyze histograms or quantum states.

Rowan Quantum Chemistry

K-Dense-AI/claude-scientific-skills

Rowan delivers cloud-based quantum chemistry via a Python API for pKa estimation, geometry optimization, conformer search, docking, and AI protein cofolding, giving scientists remote compute and automation for molecular workflows without local setup.

Scholar Evaluation Framework

scholar-evaluation

K-Dense-AI/claude-scientific-skills

Systematically evaluate academic papers, proposals, and reviews using the ScholarEval framework, scoring problem definition, methodology, analysis, writing, and citations while generating structured feedback and diagram prompts for publication-ready presentations.

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