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Unified Genomics CLI

K-Dense-AI/claude-scientific-skills

gget is a fast CLI and Python package providing unified access to 20+ genomic databases for gene info, BLAST, AlphaFold structures and enrichment lookups, making it ideal for interactive exploration and quick biological queries.

Markdown Mermaid Authoring

markdown-mermaid-writing

K-Dense-AI/claude-scientific-skills

Enforces markdown-plus-Mermaid as the canonical format for scientific docs, reports and diagrams, supplying style guides, templates and 24 diagram references so every version-controlled relationship stays text-based rather than an image.

Network Analysis Toolkit

K-Dense-AI/claude-scientific-skills

Provides Python-based tools for building, analyzing, and visualizing graph or network data, covering creation, algorithms (shortest paths, centrality, communities), generation, I/O, and rendering for domains like social, biological, or transport systems.

Structured Scientific Peer Review

K-Dense-AI/claude-scientific-skills

Use Structured Scientific Peer Review to produce checklist-guided evaluations of manuscripts and grant proposals, scrutinizing methodology, statistical rigor, reporting standards, and reproducibility while offering constructive feedback for revision.

Pydicom Medical Imaging

K-Dense-AI/claude-scientific-skills

Pydicom lets Python programs read, write, and manipulate DICOM medical imaging files, covering pixel extraction, metadata edits, anonymization, format conversion, compression handling, and PACS integration for radiology workflows.

Cloud Molecular Modeling Workflows

K-Dense-AI/claude-scientific-skills

Cloud-native Rowan orchestrates medicinal chemistry and molecular modeling pipelines via a Python API, offering pKa prediction, docking, descriptors, dynamics, and AI-driven structure workflows for scalable batch screening without local HPC.

Scholar Evaluation Framework

scholar-evaluation

K-Dense-AI/claude-scientific-skills

Systematically evaluate academic papers, proposals, and reviews using the ScholarEval framework, scoring problem definition, methodology, analysis, writing, and citations while generating structured feedback and diagram prompts for publication-ready presentations.

Scientific Writing Assistant

scientific-writing

K-Dense-AI/claude-scientific-skills

Guides creation of research manuscripts using IMRAD format, applying a two-stage outline-to-prose workflow, full citations/reporting guidelines, and mandatory graphical abstracts plus extensive figures for journal submission.

Microbiome Bioinformatics Toolkit

K-Dense-AI/claude-scientific-skills

scikit-bio is a Python biological data toolkit for sequence handling, alignments, phylogenetic trees, microbial diversity metrics, and ecological stats, ideal for microbiome research pipelines that need FASTA/Newick I/O and ordination methods.

Supply Chain Risk Auditor

supply-chain-risk-auditor

trailofbits/skills

Systematically examines project dependencies, using GitHub data to highlight single-maintainer, unmaintained, unpopular, or otherwise risky packages before audits so teams can focus security efforts and propose better-maintained alternatives.

Python Symbolic Math

K-Dense-AI/claude-scientific-skills

Guides using SymPy for symbolic mathematics in Python, covering algebra, calculus, linear systems, physics, number theory, geometry, and code generation when exact formulas or symbolic output is required instead of numeric approximations.

Convex Reactive Backend

sickn33/antigravity-awesome-skills

Guides building and scaling Convex backends with TypeScript schemas, queries, mutations, real-time subscriptions, auth, file storage, scheduling, and deployment across React, Next.js, Angular, Vue, Svelte, and RN.

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