Skill UI

Flox is a declarative, Nix-based environment manager designed to create perfectly reproducible development environments. It handles system-level dependencies (like compilers, databases, and native libraries) and ensures that complex toolchains across multiple languages (Python, Node.js, Go, etc.) function identically across macOS and Linux. Ideal for solving 'works on my machine' issues and onboarding new team members instantly.

This guide details the Hexagonal Architecture (Ports and Adapters) pattern, a robust method for decoupling core business logic from external infrastructure concerns. It teaches how to structure applications to make the domain model independent of databases, UI frameworks, or message queues. Implementing this pattern drastically improves testability, maintainability, and the ability to swap out external services without rewriting business rules.

This utility diagnoses and automatically repairs common issues within the Ruflo installation environment. It performs comprehensive health checks on core dependencies like Node.js, npm, and git, while also validating configurations, daemon status, memory databases, and API keys. It provides targeted commands to resolve issues related to memory initialization, daemon startup, and configuration resets, ensuring a stable operational environment.

A comprehensive guide for positioning highly technical research in top-tier academic venues like ISCA. It instructs authors on deep literature surveying across multiple databases (ACM, IEEE, dblp, arXiv), structuring the 'related work' section using structural differentiation (mechanism delta), and adhering to double-blind review guidelines. Essential for advanced technical paper writing.

This guide helps authors structure the Related Work section for top-tier academic journals like the Journal of Software. It focuses on demonstrating incremental contribution (delta-first positioning), structuring the review across multiple software disciplines (e.g., SE, Systems, Databases), ensuring balanced citations (international vs. domestic), and building comprehensive classification frameworks for review papers.

Biopython is a comprehensive Python library designed for computational molecular biology. It provides robust tools for handling biological sequences (DNA, RNA, Protein), structural analysis (PDB), sequence alignment, phylogenetic tree construction, and interfacing with major public databases like NCBI (Entrez). Ideal for researchers performing advanced bioinformatics tasks.

Exa MCP provides advanced neural search capabilities across the web, specialized code repositories (like GitHub), and corporate/personnel databases. Use it for deep background research, finding the latest news, debugging complex code patterns, or conducting thorough market and competitor analysis.

A comprehensive, multi-phase security scanner designed to audit development environments (Claude Code setup). It checks MCP servers, installed skills, agents, and hooks against known threat databases, malicious patterns, and supply chain vulnerabilities. Key checks include CVE screening, prompt injection detection, and unauthorized network access patterns.

A safe, cross-platform copilot for all command-line interface (CLI) needs. It detects the user's environment (OS, shell, installed tools) before suggesting or running commands. It excels at handling complex, long-running sessions (REPLs, SSH, databases) and debugging common errors like 'command not found' or 'permission denied' across Windows, macOS, and Linux.

Apply Robert C. Martin-inspired rules to separate business policy from frameworks, databases, UI, and infrastructure. This skill helps define architectural boundaries, dependency direction, use cases, and interface adapters. Use it for software design decisions involving framework isolation or technology churn to ensure maintainability and clarity.

Search and read biomedical papers, regulatory documents, clinical trials, and protein databases via the Paperclip CLI, with semantic search, SQL, map/reduce, and line-pinned citations.

Provision and manage Amazon RDS relational databases including PostgreSQL, MySQL, and SQL Server. Configure backups, replication, security, and monitoring using AWS CLI for production-grade deployments.