Skill UI

Biopython provides Python APIs for sequence manipulation, database access, BLAST automation, structural bioinformatics, and phylogenetics, making it ideal for scripting custom pipelines and batch processing in computational molecular biology workflows.

gget is a CLI/Python client that unifies querying over 20+ bioinformatics databases, letting researchers fetch gene info, sequences, BLAST results, structures, and enrichment data interactively or within scripts.

LatchBio Integration provides a Python-first platform to compose, deploy, and monitor serverless bioinformatics pipelines with the Latch SDK, decorator-based tasks, cloud storage (LatchFile/Dir), GPU tuning, and Nextflow or Snakemake interoperability.

Leverages PubChem’s PUG-REST API or PubChemPy to search 110M+ compounds by name, CID, or structure, fetch properties, perform similarity/substructure lookups, and access bioactivity or format conversions for cheminformatics workflows.

polars-bio accelerates genomic interval math and bioinformatics I/O by combining Polars, Arrow, and DataFusion to handle BED/VCF/BAM/GFF/FASTA streams, SQL queries, and cloud storage with overlap, coverage, and nearest APIs plus streaming fallbacks.

Unified Python interface to 40+ bioinformatics web services for cross-database queries, identifier mapping, sequence analysis, and pathway discovery in a single workflow.

Build, register, debug, and operate bioinformatics workflows on Latch using the Python SDK, CLI, Nextflow, Snakemake, Latch Data, Registry, and MCP. Covers resource configuration, data management, UI forms, and run monitoring.

Build, run, and debug Nextflow data pipelines and nf-core workflows end to end. Supports reproducible scientific/bioinformatics workflows, HPC/cloud scaling, and nf-core module testing.

Biopython is a comprehensive Python library designed for computational molecular biology. It provides robust tools for handling biological sequences (DNA, RNA, Protein), structural analysis (PDB), sequence alignment, phylogenetic tree construction, and interfacing with major public databases like NCBI (Entrez). Ideal for researchers performing advanced bioinformatics tasks.