Skill UI

Guides using matplotlib to craft static, animated, and interactive plots through both pyplot and object-oriented APIs, detailing styling, subplots, and export options for publication-ready scientific workflows.

Medchem Filtering Toolkit is a Python library offering drug-likeness heuristics, structural alert and PAINS filters, group detection, catalogs, and complexity scoring to triage compound libraries and prioritize leads in drug discovery workflows.

Manage microscopy data with the OMERO Python API: access projects/datasets/images, retrieve and analyze pixel data, handle ROIs and annotations, store results in tables, and automate batch workflows for high-content screening.

Accelerates CPU-bound Python workflows by translating NumPy, pandas, ML, graph, image, simulation, and IO code into NVIDIA GPU kernels using CuPy, Numba CUDA, Warp, cuDF/cuML/cuGraph, KvikIO, cuSpatial, and RAFT for dramatic speedups.

This skill provides complete, programmatic integration with the protocols.io API v3, enabling advanced management of scientific protocols. Use it for the entire protocol lifecycle, including discovery by DOI or keywords, creating new protocols, managing steps and materials, coordinating collaborative development, organizing workspaces, and tracking experiments. It covers authentication, file handling, and discussion management, making it ideal for automated lab workflows and scientific documentation systems.

PyLabRobot is a vendor-agnostic, pure Python SDK designed for autonomous and automated laboratory workflows. It provides a unified interface to control a wide array of laboratory equipment, including liquid handling robots (Hamilton, Opentrons, Tecan), plate readers, pumps, shakers, and incubators. Ideal for developing complex, multi-device, reproducible protocols and simulating experiments before physical execution.

PyOpenMS provides Python bindings for OpenMS to drive complete mass spectrometry workflows, covering data IO, spectral processing, feature/peptide-protein identification, quantitation, and metabolomics pipelines.

PyTorch Lightning Toolkit streamlines PyTorch model training by organizing LightningModules, LightningDataModules, Trainer configs, callbacks, logging, and distributed strategies for scalable multi-GPU/TPU runs in research or production workflows.

A robust Python client wrapper for interacting with the Zotero Web API v3. This skill allows users to programmatically manage academic references, including retrieving, creating, updating, and deleting items, collections, tags, and attachments. Ideal for academic researchers building automated workflows, bulk exporting citations (e.g., BibTeX), or integrating Zotero data into larger research applications.

This specialized skill automates the process of converting visual designs (from Stitch) into high-quality, modular React and Vite components. It adheres to modern frontend best practices, enforcing logic isolation via custom hooks, data decoupling using mock data files, and ensuring type safety with TypeScript interfaces. The workflow includes automated asset fetching, style mapping (Tailwind), and rigorous validation cycles to produce production-ready, maintainable code.

Guides research teams through a two-stage manuscript workflow: outline sections with research-lookup, enforce IMRAD structure, citation styles, figures, and reporting guidelines, then convert into polished prose for journals.

This tool automates the complete specification generation process across four core phases: Initialization, Requirements, Design, and Tasks. It supports both interactive (step-by-step approval) and automatic execution modes. After generating the full spec, it performs a final sanity review to ensure coherence and completeness, providing a ready-to-implement blueprint.