Skill UI

This module converts diverse clinical inputs—including scanned images, faxes, CSV/TSV exports, and C-CDA XML—into a normalized, clean text format (`ExtractedDocument`). It supports on-device OCR (Tesseract/PaddleOCR) and structured redaction for tables. It is the crucial first stage for feeding de-identification and Named Entity Recognition (NER) pipelines.

A comprehensive guide for installing, configuring, and validating the local long-term memory plugin (`memory-tencentdb`) within the OpenClaw environment. This guide covers everything from environment pre-checks to advanced configuration for data capture, information extraction, context recall, and vector embedding, ensuring robust, self-contained memory capabilities for RAG applications.

This skill processes clinical text to interpret laboratory results. It parses reference ranges (e.g., "135-145", "<5") and derives structured abnormal flags (low, normal, high, critical) for a given numeric value. It is unit-agnostic and respects explicit flags provided by the originating lab, making it crucial for structured clinical data extraction and interpretation workflows.

This skill parses complex, free-text clinical trial eligibility criteria from sources like ClinicalTrials.gov into structured, machine-readable rules. It then evaluates these criteria against a comprehensive patient profile (derived from OpenMed data) to determine potential eligibility. The output provides an explainable verdict (eligible, ineligible, or unknown) for every criterion, serving as a critical decision support tool for clinicians and researchers.

Guides users to select a local, on-device Personally Identifiable Information (PII) detection model from a committed registry. It filters models based on language, required runtime environment (e.g., PyTorch, MLX), and size constraints. The process emphasizes building an offline shortlist and mandates rigorous pre-deployment recall validation and performance benchmarking to ensure secure, privacy-preserving deployment.

A comprehensive guide for auditing and polishing original long-form manuscripts intended for submission to high-level Pattern Recognition and AI journals. It details mandatory components, formatting standards, anti-plagiarism checks, and ethical guidelines, ensuring the paper meets rigorous peer-review standards for publication.

This skill manages complex, stateful proof projects as a local-first pipeline. It guides the user through drafting, rigorous verification, and source bookkeeping. It systematically handles proof continuation across runs, maintaining a full audit trail. When local attempts stall, it orchestrates handoffs to external AI models (like GPT Pro) or performs optional deep audits (DeepSeek), ensuring a structured, traceable, and verifiable output suitable for academic or technical submission.

This skill processes raw mentions of conditions and diagnoses extracted from clinical notes. It performs synonym deduplication, filters out negated or hypothetical mentions, and assigns a structured clinical status (active, resolved, or historical). The output is a clean, reconciled problem list, structured for USCDI Problem or FHIR Condition elements.

This skill enhances raw clinical entity recognition by assigning three critical axes: Negation, Temporality, and Uncertainty (ConText). It determines the clinical status of a mention (e.g., affirmed, negated, historical, or uncertain), ensuring that basic NER results are transformed into clinically faithful assertions before grounding to standards like FHIR. Essential for accurate problem list generation and differential diagnosis support.

Utilize zero-shot NER to extract custom entity types (e.g., Drug, Symptom, Device) from complex clinical or biomedical text without requiring any labeled training data or fine-tuning. OpenMed wraps GLiNER/GLiNER2, allowing users to define labels on the fly. The workflow involves building a model index and then running inference via CLI or Python API, making it ideal for rapid prototyping or unstable schemas.

This technique segments unstructured clinical documents (such as HPI, PMH, and A&P sections) into contextually rich, canonical chunks. This is crucial for improving the precision of downstream NLP tasks like Named Entity Recognition (NER) and de-identification. By identifying and normalizing headers and mapping them to LOINC codes, the system ensures that the source context (e.g., historical vs. active) is maintained, leading to significantly more accurate results.

Provides a hardened FastAPI endpoint for OpenMed's core functionalities: clinical Named Entity Recognition (NER), Personally Identifiable Information (PII) extraction, and de-identification. Designed for self-hosted microservices, it handles inference requests, model lifecycle management, and supports dynamic batching, ensuring secure, on-device processing of sensitive clinical data.