Skill UI

ESM provides advanced protein language models (ESM3, ESMC) for deep biological understanding, generation, and structural prediction. This skill enables users to generate novel protein sequences with specific functions, perform structure prediction from sequence, execute inverse folding (sequence design from structure), and extract high-quality protein embeddings for downstream machine learning tasks. Ideal for drug discovery and advanced bioinformatics research.

PyG is the standard, powerful library for building Graph Neural Networks (GNNs) atop PyTorch. It provides specialized data structures for nodes, edges, and graphs, supporting various tasks like node classification, graph classification, and link prediction. Users can implement advanced models using built-in layers (GCN, GAT, GraphSAGE) and handle complex structures like heterogeneous graphs efficiently. It is essential for deep learning research and industrial applications involving graph data.

Tamarind Bio is a comprehensive cloud platform providing access to state-of-the-art open-source tools for structural biology and molecular design. It supports complex tasks including protein structure prediction (AlphaFold, ESMFold), molecular design (RFdiffusion, ProteinMPNN), protein-ligand docking, and binding affinity prediction. Users submit sequences or structures and receive predicted results without requiring local GPU hardware.

Genomic Intelligence provides powerful, hosted transformer models for advanced genomic analysis. Users can input a DNA/FASTA sequence and receive structured predictions for key regulatory features, including promoter regions, splice sites, enhancer activity, chromatin state, gene expression (log TPM), and de-novo gene annotation. This service operates via a REST API or MCP server, eliminating the need for local GPU hardware or model weights, making complex bioinformatics accessible through sequence input.