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Search Annotation , found 22 results

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ClinVar Variant Explorer

clinvar-database

K-Dense-AI/claude-scientific-skills

Query NCBI ClinVar for variant clinical significance, mixing gene/condition searches, API/FTP downloads, and VCF annotations to support genomic medicine interpretation workflows.

ENA Sequence Access

K-Dense-AI/claude-scientific-skills

Access the European Nucleotide Archive via REST/FTP to fetch DNA/RNA sequences, raw reads, assemblies, annotations, and taxonomy for research or bioinformatics pipelines.

Ensembl Genome API

ensembl-database

K-Dense-AI/claude-scientific-skills

Query Ensembl’s RESTful API to access gene annotations, sequences, variants, orthologs, and assembly mappings across 250+ species, enabling integration into genomic research pipelines.

NCBI Gene Explorer

K-Dense-AI/claude-scientific-skills

Access NCBI Gene data via E-utilities or Datasets API to look up genes by symbol or ID, retrieve RefSeqs, GO terms, chromosomal locations, phenotypes, and run batch workflows for annotation pipelines.

LaminDB Biological Data Platform

K-Dense-AI/claude-scientific-skills

LaminDB is a Python-driven open-source framework for managing biological datasets, ensuring traceable, reproducible, FAIR data through lineage tracking, schema validation, ontology annotation, workflow integration, and lakehouse-style querying.

Scanpy Single-Cell Workflow

K-Dense-AI/claude-scientific-skills

Scanpy is a scalable Python toolkit for single-cell RNA-seq analyses, covering QC, normalization, dimensionality reduction, clustering, marker discovery, annotation, and publication-ready visualization across h5ad/10X/CSV datasets.

Scientific Visualization Toolkit

scientific-visualization

K-Dense-AI/claude-scientific-skills

Transforms data into publication-ready figures with multi-panel layouts, precise annotations, colorblind-friendly palettes, and journal formatting using matplotlib, seaborn, and plotly plus export helpers for PDF/EPS/TIFF.

UniProt Rest Access

uniprot-database

K-Dense-AI/claude-scientific-skills

Direct REST API access to UniProt for searching proteins, fetching FASTA sequences, mapping identifiers, selecting annotations, and streaming large datasets within Python workflows.

GnomAD Variant Lookup

gnomad-database

K-Dense-AI/claude-scientific-skills

Query gnomAD via GraphQL to retrieve allele frequencies, constraint scores, and loss-of-function annotations for population-informed variant interpretation and rare disease gene prioritization.

InterPro Protein Annotation

interpro-database

K-Dense-AI/claude-scientific-skills

Query InterPro for protein family, domain, and GO annotations via a REST API with Python helpers, enabling function prediction, domain architecture mapping, and evolutionary classification insights for proteomic workflows.

UniProt Protein Database API Access

uniprot-database

sickn33/antigravity-awesome-skills

Provides direct REST API access to UniProt, the premier resource for protein sequence and functional information. This skill enables users to search proteins by name, gene, or accession number, retrieve sequences in FASTA format, perform cross-database ID mapping (e.g., Ensembl, RefSeq), and analyze functional annotations (GO terms) for building comprehensive bioinformatics pipelines.

Manage Annotation Configs and Queues

arize-annotation

github/awesome-copilot

This skill provides comprehensive management for annotation schemas (configs) and human review workflows (queues) within the Arize platform. It supports defining categorical, continuous, and freeform label types. Users can programmatically apply these annotations to project spans and datasets using the Python SDK, facilitating structured human feedback loops and improving model monitoring.

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