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NeuroKit2 Biosignal Processing

K-Dense-AI/claude-scientific-skills

NeuroKit2 is a Python biosignal processing toolkit for ECG, EEG, EDA, RSP, EMG, and EOG data that automates cleaning, feature extraction, and HRV/complexity analysis for psychophysiology, clinical, and HCI studies.

OpenAlex Research Explorer

openalex-database

K-Dense-AI/claude-scientific-skills

Use the OpenAlex client to query 240M+ scholarly works for literature searches, citation tracking, open access discovery, and bibliometric studies across papers, authors, and institutions.

Open Targets Explorer API

opentargets-database

K-Dense-AI/claude-scientific-skills

Provides GraphQL queries to the Open Targets Platform for target-disease associations, tractability, safety, drugs, and multi-omics evidence to guide therapeutic target identification, safety assessment, and repurposing research workflows.

PDB Structure Explorer

K-Dense-AI/claude-scientific-skills

Access RCSB PDB to search biomolecular structures via text, sequence, or geometry queries, download coordinate files in PDB/mmCIF/Binary formats, retrieve metadata, and batch-process entries for drug discovery, protein engineering, and structural biology pipelines.

Scientific Peer Review Checklist

K-Dense-AI/claude-scientific-skills

Structured manuscript and grant review guidance that walks reviewers through methodology, statistics, reporting compliance, and constructive feedback for rigorous scientific evaluation across disciplines.

PubMed Database Access

pubmed-database

K-Dense-AI/claude-scientific-skills

Direct REST/API access to PubMed for constructing complex Boolean or MeSH queries, filtering by publication attributes, and automating literature retrieval or citation management via NCBI’s E-utilities.

PyDESeq2 Differential Analysis

K-Dense-AI/claude-scientific-skills

PyDESeq2 brings the DESeq2 differential expression workflow to Python, letting users load bulk RNA-seq counts, specify design formulas, fit DESeq2 models, run Wald tests with FDR correction, optionally apply apeGLM shrinkage, and export gene-level statistics within pandas/AnnData pipelines.

Materials Structure Toolkit

K-Dense-AI/claude-scientific-skills

A Python materials science library for constructing, analyzing, and converting crystal structures, computing phase diagrams and electronic properties, and integrating with the Materials Project API for high-throughput workflows.

Scientific Brainstorming Partner

scientific-brainstorming

K-Dense-AI/claude-scientific-skills

Conversational research ideation assistant that helps scientists generate novel hypotheses, explore interdisciplinary analogies, challenge assumptions, and outline experiment pathways during early-stage planning.

Scientific Visualization Toolkit

scientific-visualization

K-Dense-AI/claude-scientific-skills

Transforms data into publication-ready figures with multi-panel layouts, precise annotations, colorblind-friendly palettes, and journal formatting using matplotlib, seaborn, and plotly plus export helpers for PDF/EPS/TIFF.

Microbiome Bioinformatics Toolkit

K-Dense-AI/claude-scientific-skills

scikit-bio provides a Python-native biological data toolkit for reading/writing FASTA/Newick files, manipulating sequences, building alignments and phylogenies, and calculating diversity metrics for microbiome and ecology workflows.

Scikit Learn Toolkit

K-Dense-AI/claude-scientific-skills

Guides developers through scikit-learn workflows for classical supervised and unsupervised tasks, data preprocessing, evaluation schemes, hyperparameter tuning, and end-to-end pipelines when building interpretable production models.

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