Skill UI

FlowIO reads and writes Flow Cytometry Standard (FCS) files, exposing metadata, channels, and NumPy event arrays while allowing CSV/DataFrame conversion, making it ideal for cytometry pipelines and backend preprocessing services.

Astropy is a core Python library for astronomy and astrophysics workflows. It provides essential functionality for astronomical research and data analysis, including coordinate transformations, unit and quantity calculations, FITS file operations, cosmological calculations, precise time handling, tabular data manipulation, and astronomical image processing. Use it for implementing or debugging astronomical data analysis code.

A comprehensive Python command-line toolkit for processing and visualizing high-throughput sequencing data including ChIP-seq, RNA-seq, and ATAC-seq. Performs quality control, normalization, sample comparison, and generates publication-quality genomic visualizations with bigWig conversion and heatmap profiles.

A Python library for reading, querying, filtering, and writing genomic file formats including SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, and tabix data. Supports pileup, coverage analysis, indexing, and CRAM reference operations with HTSlib integration. Ideal for bioinformatics workflows requiring low-level streaming access to genomic data.

Vaex is a high-performance Python library designed for processing and analyzing large tabular datasets that exceed available RAM. It supports out-of-core DataFrame operations, lazy evaluation, fast aggregations, and efficient visualization of big data. Ideal for working with massive CSV, HDF5, Arrow, or Parquet files, performing statistics on billions of rows, and building machine learning pipelines without memory constraints.

Execute comprehensive, asynchronous transcription workflows using AssemblyAI. This tool handles file upload, queues jobs, and provides advanced audio intelligence features. Capabilities include speaker diarization, sentiment analysis, named entity recognition (NER), topic categorization (IAB), content safety moderation, and sensitive PII redaction. Ideal for processing meeting recordings, interviews, and large volumes of spoken content.

This skill automatically converts structured data from Excel (.xlsx) workbooks into a clean, readable Markdown format. It is essential for enabling accurate analysis, summarization, and data extraction of spreadsheet contents, especially when the user asks to 'read', 'analyze', or 'compare' data without specifying a conversion method. It supports both single files and batch processing of entire folders.

This skill converts Microsoft Word documents (.docx) into Markdown format. It is essential for accurately analyzing, summarizing, or extracting data from proprietary Word files, as direct parsing is unreliable. It supports single files, batch processing of folders, and is designed to coordinate with sibling skills (PDF and Excel) when handling mixed document types to ensure no data is skipped.

Astropy is the essential Python package for astronomical research and data analysis. It provides a comprehensive suite of tools for handling celestial coordinate transformations (e.g., ICRS, Galactic), managing physical units and quantities, processing FITS files, performing complex cosmological calculations, and ensuring precise time handling. It is indispensable for any project involving scientific data in the field of astronomy and astrophysics.