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Hugging Face CLI

hugging-face-cli

sickn33/antigravity-awesome-skills

Execute Hugging Face Hub operations using the `hf` CLI. Use when the user needs to download models/datasets/spaces, upload files to Hub repositories, create repos, manage local cache, or run comput...

Mixpanel Automation Toolkit

mixpanel-automation

davepoon/buildwithclaude

Controls Mixpanel analytics via Rube MCP to aggregate events, run segmentation, funnels, cohorts, profiles, and JQL/insight queries while ensuring schema discovery precedes automation.

Segment Automation Toolkit

segment-automation

davepoon/buildwithclaude

Automates Segment chores via Composio's Rube MCP toolkit, letting you track events, identify users, group accounts, log page views, alias profiles, and run batches after fetching current schemas.

DeepTools NGS Analysis

K-Dense-AI/claude-scientific-skills

DeepTools is a Python toolkit for NGS QC, normalization, sample comparison, and visualization, covering BAM-to-bigWig conversion, fingerprint/correlation checks, and publication-ready heatmaps/profiles for ChIP-seq, RNA-seq, and ATAC-seq workflows.

DiffDock Molecular Docking

K-Dense-AI/claude-scientific-skills

DiffDock uses diffusion-based deep learning to predict protein-ligand binding poses and confidence scores from PDB files, sequences, or SMILES/SDF inputs, enabling single-target docking or large-scale virtual screening campaigns for structure-based drug design.

FlowIO FCS Handler

K-Dense-AI/claude-scientific-skills

Lightweight Python library to read, inspect, and write FCS v2.0-3.1 files, outputting metadata, channel info, and NumPy arrays for preprocessing cytometry pipelines and backend services.

GEO Data Retriever

K-Dense-AI/claude-scientific-skills

Connect to NCBI's GEO repository, search series/samples/platforms via Entrez queries, fetch profiles, and download raw/processed matrices using GEOparse for transcriptomics and expression analysis workflows.

GeoPandas Spatial Toolkit

K-Dense-AI/claude-scientific-skills

GeoPandas extends pandas with spatial vector data handling, letting teams read/write shapefiles, GeoJSON, GeoPackage and PostGIS, run reprojections, joins, overlays, buffering, and mapping alongside matplotlib/folium/Cartopy.

PDB Structure Explorer

K-Dense-AI/claude-scientific-skills

Access RCSB PDB to search biomolecular structures via text, sequence, or geometry queries, download coordinate files in PDB/mmCIF/Binary formats, retrieve metadata, and batch-process entries for drug discovery, protein engineering, and structural biology pipelines.

Cancer Dependency Insights

K-Dense-AI/claude-scientific-skills

Query DepMap for cancer cell line dependency scores, drug sensitivity, and gene effect profiles to identify vulnerabilities, synthetic lethal partners, and validate oncology drug targets via API or data downloads.

Jaspar TFBS Toolkit

jaspar-database

K-Dense-AI/claude-scientific-skills

Query the JASPAR REST API and Python helpers to retrieve TF binding profiles, convert PFMs to PWMs, and scan DNA sequences for high-confidence motifs, enabling regulatory variant interpretation, ChIP/ATAC analysis, and TF network construction.

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