Skill UI

Automates guidance for setting up and validating feature store connectors within ML deployment pipelines, covering best practices, code generation, and production monitoring for inference.

Ray Data offers scalable distributed data processing for ML workloads, streaming across CPU/GPU clusters and integrating with PyTorch, TensorFlow, and Ray Train. Use it for batch inference, ETL, and multi-modal preprocessing from a laptop up to hundreds of nodes.

Guides TensorFlow Serving setup with step-by-step ML deployment orchestration, enforcing best practices, ready-to-run configurations, and output validation for production inference services.

Arboreto infers gene regulatory networks from bulk or single-cell RNA-seq data using scalable GRNBoost2 and GENIE3 algorithms, letting researchers filter transcription-factor targets, run distributed Dask jobs, and export ranked links for downstream analysis.

Structured workflow for building hierarchical Bayesian models with PyMC 5+, covering data prep, NUTS sampling, diagnostics, posterior checks, and predictive inference.

Statsmodels is a comprehensive Python library dedicated to advanced statistical modeling and econometrics. It provides tools for rigorous statistical inference, including Ordinary Least Squares (OLS), Generalized Linear Models (GLM), mixed-effects models, and time series analysis (ARIMA). Use this skill for detailed diagnostics, coefficient estimation, hypothesis testing, and producing publication-ready statistical reports in fields like econometrics and biostatistics.

Provide a comprehensive toolkit for RNA velocity inference in single-cell RNA-seq data, modeling unspliced/spliced kinetics to infer differentiation directions, latent time, and driver genes while complementing Scanpy pipelines.

A comprehensive toolkit for reconstructing and analyzing the evolutionary history of biological sequences (genes, proteins, genomes). The standard workflow includes multiple sequence alignment using MAFFT, robust maximum likelihood tree inference with IQ-TREE 2 and FastTree, and advanced visualization/manipulation using ETE3. This skill is essential for studies in viral phylodynamics, microbial genomics, protein family evolution, and molecular clock dating.

PyMC is a powerful Python library for probabilistic programming and advanced Bayesian inference. This comprehensive guide details the full workflow for building, fitting, and validating complex Bayesian models. Learn to implement hierarchical structures, perform MCMC sampling (NUTS), conduct posterior predictive checks (PPC), and effectively quantify uncertainty using industry best practices.

Utilize Modal, a serverless GPU cloud, for running complex machine learning workloads, including training, fine-tuning, and inference. This tool provides a zero-config environment, eliminating the need for SSH setup or Docker management. It features automatic scale-to-zero billing and local-first execution, making high-powered GPU compute accessible for debugging and small-scale experiments.

This is an advanced, structured workflow designed to conduct deep, multi-source investigations. It synthesizes current public evidence with user-provided context to generate highly structured reports. The workflow explicitly differentiates between verifiable facts, user-supplied evidence, logical inferences, and actionable recommendations, making it ideal for complex comparative analysis or continuous monitoring tasks.

This comprehensive toolkit facilitates the entire phylogenetic analysis workflow, from sequence alignment to tree inference. It integrates industry-standard tools like MAFFT for multiple sequence alignment, TrimAl for alignment trimming, and powerful maximum likelihood methods using IQ-TREE 2 or FastTree. Ideal for molecular genomics, tracing viral phylodynamics, studying protein evolution, or conducting molecular clock analysis. Built using Python for seamless integration.