Skill UI

A comprehensive Python package providing a unified interface to over 40 major bioinformatics web services and databases. Use it for complex biological workflows, including cross-database querying (e.g., UniProt, KEGG, ChEMBL), identifier mapping, protein sequence retrieval, pathway analysis, and running sequence similarity searches like BLAST. It streamlines data integration from multiple life science resources into consistent Python code.

This skill provides comprehensive integration with the LabArchives Electronic Lab Notebook (ELN) platform via its REST API. It allows users to programmatically manage notebooks, retrieve user data, automate entry creation, upload diverse attachments (PDF, CSV, images), perform full notebook backups, and generate detailed usage reports. Ideal for automating scientific workflows and integrating ELN data with tools like Jupyter or REDCap.

Latch is a robust Python framework designed for building, deploying, and managing complex, scalable bioinformatics workflows as serverless pipelines. It supports integrating multiple analysis tools (like Nextflow/Snakemake) and handles cloud data management (LatchFile/LatchDir) and detailed resource configuration (GPU, CPU, memory). Ideal for running large-scale analyses such as RNA-seq, AlphaFold, and single-cell analysis in a reproducible, production-ready environment.

This skill provides a comprehensive Python API integration for the OMERO platform, an open-source solution for managing and analyzing large-scale microscopy datasets. Users can programmatically access images, retrieve structured data, analyze raw pixel data, manage complex annotations (ROIs), and execute batch processing workflows essential for high-content screening and advanced biological research.

A comprehensive Python library for handling DICOM (Digital Imaging and Communications in Medicine) files. Use this skill for reading, writing, and manipulating complex medical images such as CT, MRI, and X-ray. Features include metadata extraction, pixel data manipulation, image anonymization (PHI removal), multi-format conversion, and processing multi-slice volumes, making it essential for medical data analysis and PACS integration.

SymPy is a powerful Python library designed for exact symbolic computation, allowing users to perform advanced mathematical operations without resorting to floating-point approximations. It provides comprehensive tools for symbolic algebra, differentiation, integration, solving complex equations (linear and non-linear), and handling linear algebra. It is essential for scientific computing, physics modeling, and advanced mathematical research, supporting multiple output formats like LaTeX.

Vaex is a high-performance Python library designed for processing and visualizing enormous tabular datasets that exceed available RAM (gigabytes to terabytes). It excels at out-of-core DataFrame operations, lazy evaluation, fast statistical aggregation, and machine learning integration on massive datasets. Use it for analyzing large CSV, Parquet, or HDF5 files efficiently on a single machine, without memory constraints.

A comprehensive guide to setting up and securing API access for Clari. Learn how to generate API tokens, configure environment variables, and test connectivity to export critical revenue intelligence and forecast data to data warehouses like Snowflake or BigQuery. Includes steps for both standard Clari API and Copilot API integration.

This reference architecture provides a comprehensive blueprint for building a robust revenue intelligence data platform integrated with Clari. It covers the entire data lifecycle, including API data extraction (ETL pipeline), data warehousing design (Snowflake/BQ), change detection logic, and advanced analytics/alerting layers. Use this guide when designing a scalable forecast tracking system, planning complex data integrations, or establishing best practices for enterprise revenue analytics.

This comprehensive checklist guides users through critical operational readiness steps for a ClickHouse production deployment. It covers server tuning (config.xml), schema design best practices, robust backup strategies (S3), detailed monitoring setup (Prometheus/Grafana), security hardening, and application integration verification. Use this document before go-live, during major upgrades, or when auditing production systems to ensure maximum stability and performance.

This skill guides the setup of CI/CD pipelines for Hex data analytics projects using GitHub Actions. It enables running automated unit tests on pull requests and triggering live project runs on the main branch merge. Use this when establishing automated testing workflows, validating data transformation logic, or integrating Hex outputs into a continuous delivery process.

This guide provides comprehensive solutions for diagnosing and resolving common errors and exceptions encountered while using the Hex data platform. It covers critical areas such as API authentication failures (401, 403), resource not found issues (404), rate limiting, and various run status errors (ERRORED, KILLED). This is essential for debugging failed data requests, optimizing integration workflows, and ensuring stable data analytics pipelines.