Skill UI

Configure automated Continuous Integration and Continuous Deployment (CI/CD) pipelines for Juicebox AI data analysis integrations. This setup utilizes GitHub Actions to run comprehensive unit tests (with mocked datasets) and integration tests (connecting to live APIs) on every PR and merge to main. It ensures that data upload logic, analysis execution, and result parsing workflows are robust and reliable before deployment.

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.

NeuroKit2 is a Python biosignal processing toolkit for ECG, EEG, EDA, RSP, EMG, and EOG data that automates cleaning, feature extraction, and HRV/complexity analysis for psychophysiology, clinical, and HCI studies.

End-to-end Neuropixels recording analysis covering SpikeGLX/OpenEphys/NWB loading, preprocessing, motion correction, Kilosort4 sorting, quality metrics, Allen/IBL curation, and AI-assisted visualization for extracellular electrophysiology.

Query the Reactome Content and Analysis Services (or the reactome2py client) to fetch pathway hierarchies, map genes, run overrepresentation/expression analyses, and explore disease interactions for systems biology research.

Query the STRING REST API to retrieve protein-protein interaction networks, map identifiers, visualize evidence-weighted edges, and run GO/KEGG/Pfam enrichment for systems biology analysis.

GeoMaster is a comprehensive geospatial science skill that guides remote sensing, GIS, spatial analysis, and machine learning workflows for Earth observation and planetary data projects, covering satellite imagery, vector/raster math, point clouds, terrain, hydrology, and cloud-native data stacks.

Run OpenMM-powered molecular dynamics simulations and MDAnalysis trajectory workflows to build protein or small-molecule systems, minimize energy, equilibrate conditions, and characterize RMSD/RMSF, contacts, and free-energy surfaces for structural biology or drug studies.

A comprehensive toolkit for reconstructing and analyzing the evolutionary history of biological sequences (genes, proteins, genomes). The standard workflow includes multiple sequence alignment using MAFFT, robust maximum likelihood tree inference with IQ-TREE 2 and FastTree, and advanced visualization/manipulation using ETE3. This skill is essential for studies in viral phylodynamics, microbial genomics, protein family evolution, and molecular clock dating.

A forensic tool designed to parse Windows PowerShell Script Block Logs (Event ID 4104) from EVTX files. It reconstructs multi-block scripts and applies advanced detection heuristics to identify obfuscated commands, encoded payloads (Base64), download cradles, and AMSI bypass attempts, crucial for threat hunting and incident response.

This is an advanced, structured workflow designed to conduct deep, multi-source investigations. It synthesizes current public evidence with user-provided context to generate highly structured reports. The workflow explicitly differentiates between verifiable facts, user-supplied evidence, logical inferences, and actionable recommendations, making it ideal for complex comparative analysis or continuous monitoring tasks.

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.