Skill UI

A comprehensive workflow for systematically reviewing medical evidence. It allows users to search databases for clinical studies, build curated citation collections, grade evidence using established frameworks like GRADE, and generate professionally formatted, structured reports in academic citation styles (e.g., AMA). Ideal for conducting literature reviews and supporting clinical research. This tool helps transform raw medical data into actionable, structured knowledge.

Integrate with the DNAnexus cloud genomics platform to build apps/applets, manage FASTQ/BAM/VCF data, run workflows, and script automations via dxpy for biomedical pipelines.

Conduct rigorous, multi-database literature reviews with systematic workflows, verified citations in styles like APA or Nature, and AI-enhanced schematics for publication-ready markdown and PDF outputs in biomedical and technical domains.

Pydicom is a Python toolkit for reading, writing, and manipulating DICOM medical imaging files, helping teams extract pixel data, manage metadata, anonymize records, convert to standard formats, and integrate with PACS workflows in healthcare research and radiology applications.

TorchDrug is a PyTorch-native toolbox for building graph neural networks tailored to molecules, proteins, and biomedical knowledge graphs, covering property prediction, generation, retrosynthesis, and knowledge graph reasoning with curated datasets and models.

An AI-driven comprehensive health analysis system that integrates multi-dimensional datasets, including biometrics, lifestyle, and medical history. It excels at anomaly detection, predicting various health risks (e.g., CVD, Diabetes), providing personalized, evidence-based recommendations, and generating detailed, interactive health reports.

A comprehensive Python library for handling DICOM (Digital Imaging and Communications in Medicine) files. Use this skill for reading, writing, and manipulating complex medical images such as CT, MRI, and X-ray. Features include metadata extraction, pixel data manipulation, image anonymization (PHI removal), multi-format conversion, and processing multi-slice volumes, making it essential for medical data analysis and PACS integration.

PyHealth is a comprehensive Python toolkit designed for building deep-learning pipelines in the clinical and healthcare domains. It supports diverse data modalities, including EHR records, physiological signals, and medical images. The framework follows a stable 5-stage pipeline (Dataset → Task → Model → Trainer → Metrics), enabling users to perform complex tasks like predicting mortality, optimizing drug recommendations, staging sleep, or cross-mapping medical codes (ICD/ATC/RxNorm) on datasets like MIMIC-III/IV and OMOP.

PyTDC (Therapeutics Data Commons) is an open-science platform providing comprehensive, AI-ready datasets and benchmarks for the entire drug discovery and development pipeline. It supports single-instance prediction (e.g., ADME, toxicity), multi-instance prediction (DTI, DDI, PPI), and novel molecule generation (MolGen). Use this skill for benchmarking machine learning models and predicting complex biomedical properties.

This skill provides a comprehensive workflow for querying documented, authoritative public APIs across scientific, environmental, and medical domains (e.g., NASA, PubChem, USGS). It ensures that data retrieval is reproducible, auditable, and traceable by defining explicit endpoints, handling pagination, and verifying data provenance, rather than relying on general knowledge inference.

Utilize the idc-index Python package to access and query massive public datasets from the NCI Imaging Data Commons (IDC). This skill allows users to search, download, and visualize large-scale radiology (CT, MR, PET) and pathology (slide) images. It is essential for AI model training, medical research, and complex medical data analysis.

This skill guides the systematic process of conducting comprehensive academic literature reviews. It allows users to search multiple biomedical, scientific, and technical databases (e.g., PubMed, arXiv, Semantic Scholar) to synthesize current knowledge. The output generates professionally formatted reports (Markdown/PDF) with verified citations, and mandatorily integrates AI-generated scientific schematics to enhance visualization and depth, suitable for research papers, meta-analyses, and state-of-the-art reports.