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Search NGS , found 24 results

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Umap Visualization Tool

sickn33/antigravity-awesome-skills

Umap provides uniform manifold approximation for dimension reduction and visualization, helping data scientists explore high-dimensional embeddings through interpretable 2D/3D layouts.

Musician Identification Using Life Events

musician-life-event

EverMind-AI/EverOS

This technique guides the identification of musicians by prioritizing unique personal life events over discography details (albums or songs). It instructs users to use highly distinctive biographical information—such as career turning points, specific personal relationships, or unusual life incidents—as the primary search anchor. This method significantly improves search accuracy when typical musical clues are insufficient.

Cellxgene Census Explorer

cellxgene-census

K-Dense-AI/scientific-agent-skills

Provides programmatic access to the CZ CELLxGENE Census (61M+ cells) for querying standardized single-cell expression, metadata, embeddings, and stats across tissues and diseases, supporting scanpy and ML workflows.

Autonomous Deep Research and Synthesis

rohitg00/awesome-claude-code-toolkit

An autonomous research agent that plans complex investigations using Directed Acyclic Graphs (DAGs). It executes sub-questions in parallel, performs gap analysis, and iteratively refines findings before synthesizing a comprehensive, structured report. Ideal for deep market analysis, academic literature reviews, or complex problem-solving requiring multiple data sources.

NGS Data Visualization

K-Dense-AI/scientific-agent-skills

deepTools is a Python command-line suite for NGS workflows, converting BAM files into normalized coverage, running QC (fingerprint, correlation, PCA), comparing samples, and rendering heatmaps or profiles for ChIP-seq, RNA-seq, and ATAC-seq analyses.

Genomic Interval Toolkit

K-Dense-AI/scientific-agent-skills

High-performance Rust toolkit with Python bindings for genomic interval analysis, covering overlap detection, coverage track generation, ML tokenization, reference sequence handling, fragment processing, and scoring workflows for sequencing datasets.

Molecular Featurization Hub

K-Dense-AI/scientific-agent-skills

Molfeat is a Python toolkit that converts SMILES/RDKit molecules into embeddings via 100+ calculators, transformers, and pretrained models for QSAR, screening, similarity search, and deep learning pipelines.

PyDESeq2 Differential Analysis

K-Dense-AI/scientific-agent-skills

PyDESeq2 brings the DESeq2 differential expression workflow to Python, letting users load bulk RNA-seq counts, specify design formulas, fit DESeq2 models, run Wald tests with FDR correction, optionally apply apeGLM shrinkage, and export gene-level statistics within pandas/AnnData pipelines.

Pysam Genomic Toolkit

K-Dense-AI/scientific-agent-skills

Pysam offers Python bindings to htslib for reading and writing SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences, enabling coverage stats, pileup analysis, variant queries, and seamless integration into NGS pipelines.

Intelligent Research Information Lookup

research-lookup

K-Dense-AI/scientific-agent-skills

This skill provides intelligent, multi-backend research lookup, automatically routing queries to the optimal source. It utilizes fast web search for general queries, the Parallel Chat API for deep synthesis, and Perplexity for academic paper searches. Use it to gather up-to-date scientific findings, verify facts, analyze market trends, or retrieve technical documentation.

Fast UMAP Dimensionality Reduction

K-Dense-AI/scientific-agent-skills

Use UMAP for fast nonlinear manifold reduction to produce embeddings that keep local and global structure, making it ideal for visualization, clustering preprocessing, supervised/parametric workflows, or high-dimensional feature engineering.

US Treasury Fiscal API

K-Dense-AI/scientific-agent-skills

Provides open REST access to the U.S. Treasury Fiscal Data API so analysts can pull national debt, spending, revenue, interest rates, exchange rates, auctions, and savings bond statistics without an API key; useful for financial dashboards, debt tracking, and research involving federal fiscal metrics.

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