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FlowIO FCS Handler

K-Dense-AI/claude-scientific-skills

FlowIO reads and writes Flow Cytometry Standard (FCS) files, exposing metadata, channels, and NumPy event arrays while allowing CSV/DataFrame conversion, making it ideal for cytometry pipelines and backend preprocessing services.

NCBI Gene Explorer

K-Dense-AI/claude-scientific-skills

Access NCBI Gene data via E-utilities or Datasets API to look up genes by symbol or ID, retrieve RefSeqs, GO terms, chromosomal locations, phenotypes, and run batch workflows for annotation pipelines.

GEO Data Retriever

K-Dense-AI/claude-scientific-skills

Connect to NCBI's GEO repository, search series/samples/platforms via Entrez queries, fetch profiles, and download raw/processed matrices using GEOparse for transcriptomics and expression analysis workflows.

GeoPandas Spatial Toolkit

K-Dense-AI/claude-scientific-skills

GeoPandas extends pandas for geospatial vector data, enabling reading/writing shapefiles, GeoJSON, GeoPackage and PostGIS, performing CRS management, spatial joins, overlays, buffering, area/distance calculations, and producing static or interactive choropleth maps.

OFR Hedge Fund Monitor

hedgefundmonitor

K-Dense-AI/claude-scientific-skills

Access aggregated OFR hedge fund time series and metadata without auth, covering Form PF stats, repo volumes, futures trader positioning, and leverage/counterparty metrics for risk monitoring or research.

Histolab WSI Tile Processing

K-Dense-AI/claude-scientific-skills

Histolab streamlines whole-slide microscopy by automating tissue detection, tile extraction, and stain normalization for H&E scans, making it ideal for lightweight dataset prep and quick tile-based analysis.

NeuroKit2 Biosignal Processing

K-Dense-AI/claude-scientific-skills

NeuroKit2 is a Python biosignal processing toolkit for ECG, EEG, EDA, RSP, EMG, and EOG data that automates cleaning, feature extraction, and HRV/complexity analysis for psychophysiology, clinical, and HCI studies.

Neuropixels Analysis Toolkit

neuropixels-analysis

K-Dense-AI/claude-scientific-skills

End-to-end Neuropixels recording analysis covering SpikeGLX/OpenEphys/NWB loading, preprocessing, motion correction, Kilosort4 sorting, quality metrics, Allen/IBL curation, and AI-assisted visualization for extracellular electrophysiology.

OpenAlex Research Explorer

openalex-database

K-Dense-AI/claude-scientific-skills

Use the OpenAlex client to query 240M+ scholarly works for literature searches, citation tracking, open access discovery, and bibliometric studies across papers, authors, and institutions.

Open Targets Explorer API

opentargets-database

K-Dense-AI/claude-scientific-skills

Provides GraphQL queries to the Open Targets Platform for target-disease associations, tractability, safety, drugs, and multi-omics evidence to guide therapeutic target identification, safety assessment, and repurposing research workflows.

Scientific Peer Review Checklist

K-Dense-AI/claude-scientific-skills

Structured manuscript and grant review guidance that walks reviewers through methodology, statistics, reporting compliance, and constructive feedback for rigorous scientific evaluation across disciplines.

PyMC Bayesian Modeling

pymc-bayesian-modeling

K-Dense-AI/claude-scientific-skills

Structured workflow for building hierarchical Bayesian models with PyMC 5+, covering data prep, NUTS sampling, diagnostics, posterior checks, and predictive inference.

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