Skill UI

Provides direct REST API access to UniProt, the premier resource for protein sequence and functional information. This skill enables users to search proteins by name, gene, or accession number, retrieve sequences in FASTA format, perform cross-database ID mapping (e.g., Ensembl, RefSeq), and analyze functional annotations (GO terms) for building comprehensive bioinformatics pipelines.

This skill provides comprehensive management for annotation schemas (configs) and human review workflows (queues) within the Arize platform. It supports defining categorical, continuous, and freeform label types. Users can programmatically apply these annotations to project spans and datasets using the Python SDK, facilitating structured human feedback loops and improving model monitoring.

This technique guides users to use precise chemical compound names, specific concentration values (e.g., "1.5 mg/L"), and taxonomic synonym counts as exact-match search anchors when querying biological literature. By leveraging quotation marks and combining multiple specific terms, it uniquely identifies research papers or species details, greatly improving search precision in biochemistry and botany.

AnnData is a specialized Python package designed for managing and analyzing annotated matrices, particularly crucial in single-cell genomics and bioinformatics. It efficiently stores experimental measurements (X) alongside comprehensive metadata (obs, var, obsm, etc.). This skill allows users to read, write, subset, and concatenate large, complex datasets in formats like .h5ad and .zarr, making it essential for scRNA-seq analysis workflows and integration with the scverse ecosystem.

Geniml is a comprehensive Python package designed for applying machine learning models to genomic interval data, typically stored in BED files. It provides several unsupervised methods—including Region2Vec and BEDspace—to learn robust embeddings of genomic regions, single cells (scATAC-seq), and associated metadata. Use cases include dimensionality reduction, structural variation analysis, cell-type annotation, and cross-modal querying in genomics research.

This skill provides a comprehensive Python API integration for the OMERO platform, an open-source solution for managing and analyzing large-scale microscopy datasets. Users can programmatically access images, retrieve structured data, analyze raw pixel data, manage complex annotations (ROIs), and execute batch processing workflows essential for high-content screening and advanced biological research.

A comprehensive Python wrapper for OpenMS, designed for sophisticated computational mass spectrometry workflows. It supports end-to-end analysis in proteomics and metabolomics, enabling feature detection, peptide/protein identification, quantitative analysis (label-free/isobaric), and adduct/accurate mass annotation. Ideal for researchers processing complex LC-MS/MS raw data and running high-level pipelines.

A comprehensive, scalable Python toolkit designed for end-to-end single-cell RNA-seq data analysis. It supports crucial steps including quality control (QC), normalization, dimensionality reduction (PCA, UMAP, t-SNE), cell clustering, and differential gene expression analysis. The skill provides ready-to-run scripts for analyzing various formats (e.g., .h5ad, 10X, R-native) and generating publication-quality visualizations and cell type annotations.

A comprehensive tool for managing annotation datasets, supporting full CRUD operations, label management, and advanced export functionality. It specifically handles COCO format export and facilitates uploading datasets to platforms like Kaggle, streamlining the data pipeline for AI model development.

This guide details how to configure and manage resource constraints in ClickHouse, addressing server-side limits, user quotas, and connection management. Use it when encountering "too many simultaneous queries," optimizing resource usage, or implementing robust rate limiting strategies in applications connecting to ClickHouse. Covers SQL quota setup and client-side pooling techniques.

Builds a robust, automated workflow to export critical sales data—including forecasts, quota details, adjustments, and CRM totals—from Clari CRM to a designated data warehouse. The pipeline supports multiple targets like Snowflake, BigQuery, and PostgreSQL, ensuring that real-time revenue intelligence is available for advanced analytics and business reporting.

This guide provides a comprehensive walkthrough for interacting with the Clari API to export critical business data. It covers listing available forecasts, initiating the export of forecast and quota snapshots, monitoring the job status, and ultimately downloading and parsing the structured data. This skill is ideal for testing API connectivity and integrating Clari's revenue intelligence into external data pipelines.