Skill UI

A comprehensive Python wrapper for OpenMS, designed for sophisticated computational mass spectrometry workflows. It supports end-to-end analysis in proteomics and metabolomics, enabling feature detection, peptide/protein identification, quantitative analysis (label-free/isobaric), and adduct/accurate mass annotation. Ideal for researchers processing complex LC-MS/MS raw data and running high-level pipelines.

scikit-bio is a comprehensive Python library designed for advanced bioinformatics and biological data analysis. It provides robust capabilities for sequence manipulation (DNA, RNA, Protein), performing complex sequence alignments (pairwise and multiple), constructing and analyzing phylogenetic trees, and calculating diverse ecological metrics. It is essential for microbiome analysis, evolutionary studies, and general biological data processing, supporting standard formats like FASTA, Newick, and BIOM.

Vaex is a high-performance Python library designed for processing and visualizing enormous tabular datasets that exceed available RAM (gigabytes to terabytes). It excels at out-of-core DataFrame operations, lazy evaluation, fast statistical aggregation, and machine learning integration on massive datasets. Use it for analyzing large CSV, Parquet, or HDF5 files efficiently on a single machine, without memory constraints.

A comprehensive guide to designing high-performance schemas in ClickHouse. Learn how to select the optimal MergeTree engine (e.g., ReplacingMergeTree, AggregatingMergeTree), structure the ORDER BY key for maximum query efficiency, and implement effective partitioning strategies for large-scale analytical workloads and ETL processes.

A powerful command-line interface (CLI) tool, modeled after kubectl/docker, designed for comprehensive management of GPU compute jobs on the Qizhi platform. It supports job submission (interactive/non-interactive), resource discovery, node availability checking, and batch processing for distributed training and HPC workloads. Ideal for machine learning engineers and data scientists running large-scale scientific computations.

This tool guides users through the critical process of designing experiments *before* data collection. It helps select appropriate structures—such as factorial, crossover, or blocked designs—to ensure that collected data is interpretable and allows for robust causal inference. Use it when planning scientific studies, assigning subjects, or optimizing responses across multiple factors.

This skill processes raw, unstructured materials (e.g., conversations, reports, controversies) into highly structured, reusable casebook entries. It focuses on identifying core facts, defining mechanism chains, and mapping responsibility links while ensuring rigorous data anonymization. It is designed for deep knowledge management and pattern recognition, helping users build a reliable, reusable knowledge base for future professional analysis, rather than generating immediate advice.

A systematic skill designed to investigate data incidents, including freshness delays, volume anomalies, schema changes, and ETL failures. It guides the agent through a comprehensive process using Monte Carlo's observability metadata and optional direct data querying to pinpoint the root cause.