Skill UI

Provides comprehensive monitoring for the Clay data enrichment pipeline. It tracks critical operational metrics such as credit consumption velocity, enrichment success rates (hit rates), data quality scores, and lead distribution. Essential for cost control and ensuring pipeline health in data-intensive CRM workflows.

A comprehensive system for implementing policy guardrails in data enrichment pipelines. It enforces critical controls including credit spending limits, blocks the enrichment of sensitive PII (e.g., SSN, bank details), and validates input data quality. Essential for maintaining compliance (GDPR/CCPA) and managing costs when processing large volumes of personal and business data.

This comprehensive checklist guides the deployment of Databricks data pipelines and jobs to a production environment. It covers critical stages including pre-deployment security hardening (Service Principals, Unity Catalog), validating infrastructure (cluster types, autoscaling), ensuring code quality (unit/integration tests, Delta Lake best practices), executing controlled deployment, and performing post-deployment health checks and monitoring setup. Ideal for CI/CD pipelines and go-live procedures.

DeepTools is a comprehensive command-line toolkit for processing and analyzing high-throughput sequencing data. It supports workflows for ChIP-seq, RNA-seq, ATAC-seq, and other NGS experiments. Core capabilities include converting BAM files to normalized coverage tracks (bigWig), performing quality control (QC), sample correlation analysis, and generating publication-quality visualizations, such as heatmaps and profile plots across genomic regions.

PathML is a dedicated computational pathology software designed for local, research-only workflows. It enables users to load and tile whole slide images, build comprehensive preprocessing and quality control pipelines, quantify multiplex data, construct spatial graphs, and plan bounded model inference. It is crucial for researchers handling highly sensitive medical images while maintaining strict data privacy and local processing standards.

A comprehensive, scalable Python toolkit designed for end-to-end single-cell RNA-seq data analysis. It supports crucial steps including quality control (QC), normalization, dimensionality reduction (PCA, UMAP, t-SNE), cell clustering, and differential gene expression analysis. The skill provides ready-to-run scripts for analyzing various formats (e.g., .h5ad, 10X, R-native) and generating publication-quality visualizations and cell type annotations.

This skill provides an end-to-end, highly reproducible workflow for bulk RNA-seq differential expression analysis. It orchestrates the entire pipeline, guiding users from raw FASTQ reads through Quality Control (QC), trimming, alignment (STAR/Salmon), quantification, generating a gene-level counts matrix, and finally executing differential expression testing (pydeseq2) and pathway enrichment analysis. It is designed for robust, statistically sound, and fully documented results.