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Search Support , found 24 results

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Structured Paper Search

bgpt-paper-search

K-Dense-AI/claude-scientific-skills

BGPT Paper Search queries the BGPT MCP server for scientific publications, returning structured metadata such as methods, quantitative results, sample sizes, and quality scores for each full-text study to support reviews, meta-analyses, and evidence synthesis.

ChEMBL Bioactivity Query

chembl-database

K-Dense-AI/claude-scientific-skills

Programmatically query ChEMBL bioactive molecules, targets, and approved drugs via the Python client; filter by structure, properties, activities, and indications to support inhibitor hunting or SAR studies for medicinal chemistry.

Clinical Decision Support

clinical-decision-support

K-Dense-AI/claude-scientific-skills

Generate publication-ready clinical decision support documents for pharmaceutical and research teams, including biomarker-stratified cohort analyses and evidence-graded treatment recommendation reports with statistical and regulatory compliance details.

ClinPGx Database Access

clinpgx-database

K-Dense-AI/claude-scientific-skills

Provide REST API access to ClinPGx, the successor to PharmGKB, for querying gene-drug interactions, CPIC/DPWG/FDA guidelines, allele functions, and evidence that supports precision dosing and pharmacogenomics-driven clinical decisions.

ClinVar Variant Explorer

clinvar-database

K-Dense-AI/claude-scientific-skills

Query NCBI ClinVar for variant clinical significance, mixing gene/condition searches, API/FTP downloads, and VCF annotations to support genomic medicine interpretation workflows.

Data Commons Client

datacommons-client

K-Dense-AI/claude-scientific-skills

Provides a Python client for querying the Data Commons knowledge graph so teams can resolve entities, fetch statistical observations, and explore public demographic, economic, and health datasets with optional Pandas support.

GWAS Catalog Access

K-Dense-AI/claude-scientific-skills

Query the NHGRI-EBI GWAS Catalog for SNP-trait associations, fetch study metadata, variant and trait details, and download summary statistics via the web or REST APIs to support genetic epidemiology and polygenic risk modeling.

Latch Bio Workflows

latchbio-integration

K-Dense-AI/claude-scientific-skills

LatchBio Integration helps build serverless bioinformatics workflows with Python decorators, LatchFile/LatchDir data management, resource tuning, and Nextflow/Snakemake support for production pipelines.

Therapeutics Data Commons

K-Dense-AI/claude-scientific-skills

PyTDC offers curated AI-ready datasets, standardized benchmarks, and scaffold-aware splits across ADME, toxicity, interaction, and generation tasks to support therapeutic ML and pharmacological prediction workflows.

TileDB VCF Storage

K-Dense-AI/claude-scientific-skills

TileDB-VCF lets you ingest, store, query, and export large genomic VCF/BCF datasets using TileDB’s sparse arrays, supporting incremental sample growth, parallel regions queries, and cloud-local interoperability for population genomics workflows.

UMAP Manifold Reduction

K-Dense-AI/claude-scientific-skills

UMAP-Learn delivers fast nonlinear dimensionality reduction for visualization, clustering prep, and feature engineering; it mirrors scikit-learn APIs and supports supervised/semi-supervised embeddings with tunable parameters.

BindingDB Affinity Access

bindingdb-database

K-Dense-AI/claude-scientific-skills

Query BindingDB for measured drug-target affinities (Ki, Kd, IC50, EC50) via REST endpoints or downloaded TSVs to support target-centric drug discovery, SAR analysis, lead profiling, and benchmarking datasets.

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