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Pacsomatic Workflow Automation Tool

K-Dense-AI/scientific-agent-skills

This skill automates the nf-core/pacsomatic pipeline for matched tumor-normal variant calling from BAM files. It handles input validation, samplesheet generation, dry-run checks, and submission to schedulers like Slurm or LSF. Ideal for reproducible bioinformatics analysis execution and troubleshooting pipeline failures.

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