Skill UI

Toolkit for Python-based survival and time-to-event modeling with scikit-survival, supporting Cox models, ensemble learners, SVMs, and evaluation metrics for censored data.

Probabilistic deep-learning framework built on PyTorch for single-cell omics; handles batch correction, integration, multimodal and spatial data, differential expression, and transfer learning with unified APIs.

TorchDrug is a PyTorch-native toolbox for building graph neural networks tailored to molecules, proteins, and biomedical knowledge graphs, covering property prediction, generation, retrosynthesis, and knowledge graph reasoning with curated datasets and models.

Zarr is a Python toolkit for chunked N-D array storage with compression, sharding, and native integrations with NumPy/Dask/Xarray, ideal for parallel I/O and scalable cloud pipelines.

A comprehensive toolkit designed to track and analyze content performance, engagement metrics, and Return on Investment (ROI) across major social media platforms. By utilizing specialized Apify Actors, this skill extracts deep insights from Instagram, Facebook, YouTube, TikTok, and more, helping users identify high-performing content, monitor growth, and measure marketing campaign effectiveness.

A comprehensive toolkit designed for advanced data scraping and automation workflows on X/Twitter. Capabilities include deep tweet search, user profile analysis, bulk follower/media export, automated posting (replies, DMs), real-time account monitoring via webhooks, and integration with multiple AI agent platforms (Hermes, OpenClaw). Ideal for market research, social listening, and content automation.

Query the JASPAR REST API and Python helpers to retrieve TF binding profiles, convert PFMs to PWMs, and scan DNA sequences for high-confidence motifs, enabling regulatory variant interpretation, ChIP/ATAC analysis, and TF network construction.

Run OpenMM-powered molecular dynamics simulations and MDAnalysis trajectory workflows to build protein or small-molecule systems, minimize energy, equilibrate conditions, and characterize RMSD/RMSF, contacts, and free-energy surfaces for structural biology or drug studies.

Provide a comprehensive toolkit for RNA velocity inference in single-cell RNA-seq data, modeling unspliced/spliced kinetics to infer differentiation directions, latent time, and driver genes while complementing Scanpy pipelines.

A comprehensive toolkit for reconstructing and analyzing the evolutionary history of biological sequences (genes, proteins, genomes). The standard workflow includes multiple sequence alignment using MAFFT, robust maximum likelihood tree inference with IQ-TREE 2 and FastTree, and advanced visualization/manipulation using ETE3. This skill is essential for studies in viral phylodynamics, microbial genomics, protein family evolution, and molecular clock dating.

Pandas is a Python data analysis library that simplifies loading, cleaning, transforming, and analyzing structured datasets, making it ideal for data wrangling in analytics or engineering workflows.

A comprehensive automation toolkit for Mixpanel product analytics, accessible via Rube MCP. Automate key data tasks including event aggregation, detailed segmentation, conversion funnel analysis, user profile management, cohort tracking, and running custom JQL queries. Ideal for data analysts and product managers needing to deeply analyze user behavior patterns.