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BGPT Structured Paper Search

bgpt-paper-search

K-Dense-AI/claude-scientific-skills

BGPT Paper Search queries the remote MCP server to retrieve structured experimental data from full-text studies, returning methods, results, sample sizes, quality scores, and conclusions for efficient literature reviews and evidence synthesis.

bioRxiv Preprint Search

biorxiv-database

K-Dense-AI/claude-scientific-skills

Enables efficient querying of the bioRxiv preprint server with keywords, authors, dates, and categories, returning structured JSON metadata and optional PDF downloads for literature reviews or tracking research trends.

BioServices Cross-DB API

K-Dense-AI/claude-scientific-skills

BioServices provides Python wrappers for 40+ bioinformatics services, allowing cross-database queries, identifier mapping, pathway exploration, and sequence or compound research within consistent workflows.

BRENDA Enzyme Explorer

brenda-database

K-Dense-AI/claude-scientific-skills

Access the BRENDA SOAP API to retrieve enzyme kinetic parameters, reaction equations, organism-specific data, and environmental preferences, enabling biochemical research, metabolic pathway reconstruction, and enzyme engineering workflows.

Cellxgene Census Explorer

cellxgene-census

K-Dense-AI/claude-scientific-skills

Provides programmatic access to the CZ CELLxGENE Census (61M+ cells) for querying standardized single-cell expression, metadata, embeddings, and stats across tissues and diseases, supporting scanpy and ML workflows.

ChEMBL Bioactivity Query

chembl-database

K-Dense-AI/claude-scientific-skills

Programmatically query ChEMBL bioactive molecules, targets, and approved drugs via the Python client; filter by structure, properties, activities, and indications to support inhibitor hunting or SAR studies for medicinal chemistry.

Clinical Decision Support Reports

clinical-decision-support

K-Dense-AI/claude-scientific-skills

Generates publication-ready clinical decision support documents for pharma and clinical research, covering biomarker-stratified cohort analysis, evidence-graded treatment recommendations, statistical comparisons, and regulatory-ready LaTeX/PDF outputs.

Clinical Trials Database

clinicaltrials-database

K-Dense-AI/claude-scientific-skills

Access the ClinicalTrials.gov API v2 to search trials by condition, drug, location, sponsor or status, fetch details via NCT ID, and export JSON/CSV data for research analysis, patient matching, and trial monitoring.

ClinPGx Database Access

clinpgx-database

K-Dense-AI/claude-scientific-skills

Provide REST API access to ClinPGx, the successor to PharmGKB, for querying gene-drug interactions, CPIC/DPWG/FDA guidelines, allele functions, and evidence that supports precision dosing and pharmacogenomics-driven clinical decisions.

ClinVar Variant Explorer

clinvar-database

K-Dense-AI/claude-scientific-skills

Query NCBI ClinVar for variant clinical significance, mixing gene/condition searches, API/FTP downloads, and VCF annotations to support genomic medicine interpretation workflows.

COSMIC Mutation Access

cosmic-database

K-Dense-AI/claude-scientific-skills

Programmatic access to the COSMIC cancer mutation database for downloading mutations, Cancer Gene Census, mutational signatures, fusions, copy number, expression, and resistance data to fuel oncology research or bioinformatics pipelines after authentication.

Data Commons Client

datacommons-client

K-Dense-AI/claude-scientific-skills

Provides a Python client for querying the Data Commons knowledge graph so teams can resolve entities, fetch statistical observations, and explore public demographic, economic, and health datasets with optional Pandas support.

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