Skill UI

Query the Monarch Initiative API to explore disease-gene-phenotype associations across species, enabling rare disease gene discovery, phenotype-to-gene mapping, and cross-species modeling via integrated HPO and model organism data.

This skill provides comprehensive functionality for querying, comparing, and calculating nutritional data from a structured food database. Users can perform precise searches by food name or nutritional criteria (e.g., high protein, low GI). It supports calculating total nutrient intake based on specific portions, suggesting foods for various health conditions (like diabetes or high blood pressure), and performing detailed comparative analysis between multiple food items.

Build a production-ready, AI-powered data collection agent for any public source (job boards, prices, news, etc.). This agent automatically scrapes data, enriches it using free LLMs (like Gemini Flash), and stores the results in databases such as Notion, Sheets, or Supabase. It runs on a free schedule using GitHub Actions and learns from user feedback, making it ideal for continuous data monitoring and tracking.

This advanced skill systematically verifies the novelty of a proposed research method or technical idea against the global body of academic literature. It guides the user to extract core technical claims, performs multi-source searches across major academic databases (e.g., arXiv, Google Scholar, top conferences), and utilizes high-level LLM reasoning to generate a detailed, structured novelty assessment report. Ideal for researchers seeking to validate the unique contribution of their work.

This skill provides a systematic framework for managing Indicators of Compromise (IOCs) throughout their entire life cycle—from initial discovery and validation to enrichment, deployment, monitoring, and eventual retirement. It emphasizes implementing confidence decay functions, tracking hit rates, and managing false positives to maintain a high-quality, actionable threat intelligence database, thereby minimizing analyst fatigue and maximizing detection efficacy.

This skill uses advanced AI and LLM capabilities to correlate fragmented Open Source Intelligence (OSINT) data. It ingests findings from diverse sources—including username enumeration, email lookups, social media, domain records, and breach databases—to generate unified, intelligence-grade profiles. It provides link analysis and confidence scoring, transforming raw data into actionable threat intelligence for target profiling.

Provides REST API access to PubMed for building advanced Boolean/MeSH queries, filtering by publication details, and programmatically fetching citations through E-utilities, making it ideal for systematic reviews and automated literature workflows.

Provides direct REST API access to UniProt, the premier resource for protein sequence and functional information. This skill enables users to search proteins by name, gene, or accession number, retrieve sequences in FASTA format, perform cross-database ID mapping (e.g., Ensembl, RefSeq), and analyze functional annotations (GO terms) for building comprehensive bioinformatics pipelines.

A powerful tool for scientific literature review and evidence synthesis. This skill searches a curated database of full-text scientific papers, going beyond traditional abstracts. It extracts and returns highly structured, quantitative data, including methodologies, quantitative results, sample sizes, quality scores, and 25+ metadata fields per paper, making it ideal for meta-analyses and systematic reviews.

Biopython is a robust, comprehensive toolkit for computational molecular biology written in Python. It enables users to manipulate biological sequences (DNA, RNA, protein), parse standard formats (FASTA, GenBank, PDB, etc.), and programmatically access major bioinformatics databases like NCBI via Entrez. This skill is ideal for developing complex bioinformatics pipelines, including sequence alignment, structural analysis, and phylogenetic tree construction.

A comprehensive Python package providing a unified interface to over 40 major bioinformatics web services and databases. Use it for complex biological workflows, including cross-database querying (e.g., UniProt, KEGG, ChEMBL), identifier mapping, protein sequence retrieval, pathway analysis, and running sequence similarity searches like BLAST. It streamlines data integration from multiple life science resources into consistent Python code.

gget is a comprehensive command-line tool and Python package offering unified access to over 20 genomic databases. It facilitates quick lookups for gene information, sequence analysis (BLAST), protein structures, and expression data, supporting both interactive CLI use and advanced programmatic Python workflows for biological research.