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GeoPandas Spatial Toolkit

K-Dense-AI/claude-scientific-skills

GeoPandas extends pandas for geospatial vector data, enabling reading/writing shapefiles, GeoJSON, GeoPackage and PostGIS, performing CRS management, spatial joins, overlays, buffering, area/distance calculations, and producing static or interactive choropleth maps.

Tarot Decision Guide

let-fate-decide

trailofbits/skills

Draws four cryptographically random Tarot cards and reads their meanings to orient choices when prompts are ambiguous, indecisive, or explicitly ask for fate-based guidance, then narrates how the spread maps to next steps.

Open Notebook Research Hub

K-Dense-AI/claude-scientific-skills

Self-hosted open-source alternative to NotebookLM for organizing research, ingesting diverse sources, generating AI notes, running context-aware chats, performing vector search, producing multi-speaker podcasts, and automating workflows via a REST API.

Opentrons Protocol Integration

opentrons-integration

K-Dense-AI/claude-scientific-skills

Provides the official Opentrons Protocol API v2 integration for OT-2 and Flex robots, enabling Python-based automation of liquid handling, module control, labware setup, pipetting flows, and protocol testing before execution.

Hardware-Agnostic Quantum ML

K-Dense-AI/claude-scientific-skills

Hardware-agnostic quantum ML framework enabling gradient-based training of quantum circuits, hybrid quantum-classical models, and seamless integration with PyTorch/JAX/TensorFlow alongside device portability across IBM/Google/Rigetti/IonQ.

Medical Imaging DICOM Toolkit

K-Dense-AI/claude-scientific-skills

Pydicom is a Python toolkit for reading, writing, and manipulating DICOM medical imaging files, helping teams extract pixel data, manage metadata, anonymize records, convert to standard formats, and integrate with PACS workflows in healthcare research and radiology applications.

Healthcare AI Toolkit

K-Dense-AI/claude-scientific-skills

PyHealth delivers a full-stack Python toolkit for building, evaluating, and deploying clinical machine learning models, covering EHR datasets, medical coding systems, physiological signals, and healthcare-tailored architectures such as RETAIN, SafeDrug, and Transformer-based pipelines.

Pymoo Multi Objective Optimizer

K-Dense-AI/claude-scientific-skills

Python framework for multi-objective optimization, offering NSGA-II/III, MOEA/D, benchmark suites, customizable operators, and visualization to help engineering teams explore Pareto fronts and make multi-criteria decisions.

Therapeutics Data Commons

K-Dense-AI/claude-scientific-skills

Provides AI-ready drug discovery datasets, splits, and benchmarks covering ADME, toxicity, DTI, DDI, and molecular generation so researchers can train, compare, and optimize therapeutic ML models with curated splits and oracles.

Qiskit Quantum Computing Framework

K-Dense-AI/claude-scientific-skills

Qiskit is the world's leading open-source framework for building, optimizing, and executing quantum circuits. It provides comprehensive capabilities for quantum error mitigation, running algorithms on diverse hardware backends (including IBM Quantum and simulators), and supporting applications in chemistry and machine learning. Essential for researchers entering the quantum computing field.

Scholar Evaluation Framework

scholar-evaluation

K-Dense-AI/claude-scientific-skills

This skill runs the ScholarEval framework to score academic submissions across problem setting, methodology, data, analysis, writing, and references, providing structured strengths/weaknesses, numeric ratings, and guidance for visualizing the evaluation.

SHAP Model Explainability

K-Dense-AI/claude-scientific-skills

Guides using SHAP to explain ML predictions, compute feature importance, generate diagnostic plots, debug models, analyze bias, and compare models across tree, deep, linear, or black-box architectures.

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