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Agentic Actions Auditor

agentic-actions-auditor

trailofbits/skills

Audits GitHub Actions workflows that invoke AI coding agents to surface prompt injection and sandbox risks, tracing attacker-controlled inputs through env vars, reusable actions, and workflow references before deployment or code review.

Arboreto GRN Inference

K-Dense-AI/claude-scientific-skills

Arboreto infers gene regulatory networks from bulk or single-cell RNA-seq data using scalable GRNBoost2 and GENIE3 algorithms, letting researchers filter transcription-factor targets, run distributed Dask jobs, and export ranked links for downstream analysis.

bioRxiv Preprint Search

biorxiv-database

K-Dense-AI/claude-scientific-skills

Enables efficient querying of the bioRxiv preprint server with keywords, authors, dates, and categories, returning structured JSON metadata and optional PDF downloads for literature reviews or tracking research trends.

Clinical Report Composer

clinical-reports

K-Dense-AI/claude-scientific-skills

Compose comprehensive clinical reports—case studies, diagnostics, trials, and patient notes—while ensuring CARE/ICH-GCP compliance, HIPAA-safe documentation, and mandatory AI-generated scientific schematics for each deliverable.

Resource Detection For Science

get-available-resources

K-Dense-AI/claude-scientific-skills

Detects system CPU, GPU, memory, and disk availability before heavy scientific tasks, writing `.claude_resources.json` with strategic recommendations (parallelism, out-of-core, GPU acceleration) so analysts choose appropriate compute approaches.

Automated Hypothesis Discovery

K-Dense-AI/claude-scientific-skills

Hypogenic automates LLM-driven hypothesis generation and testing over tabular datasets, blending literature insights with empirical analysis to accelerate discovery in domains like deception detection or AI content evaluation.

LaminDB Biological Data Platform

K-Dense-AI/claude-scientific-skills

LaminDB is a Python-driven open-source framework for managing biological datasets, ensuring traceable, reproducible, FAIR data through lineage tracking, schema validation, ontology annotation, workflow integration, and lakehouse-style querying.

Markdown Mermaid Diagram Workflow

markdown-mermaid-writing

K-Dense-AI/claude-scientific-skills

Defines a Markdown/Mermaid-first documentation skill for scientific and technical writing, providing diagram standards, 24 reference types, and templates so every report, README, or analysis stays text-first, versionable, and visualization-ready.

Matchms Spectral Matching

K-Dense-AI/claude-scientific-skills

Matchms processes LC-MS/MS spectra with import/export tools, filtering, and multiple similarity scorers so you can identify metabolites, match libraries, and automate reproducible workflows.

OMERO Microscopy Integration

omero-integration

K-Dense-AI/claude-scientific-skills

Manage microscopy data with the OMERO Python API: access projects/datasets/images, retrieve and analyze pixel data, handle ROIs and annotations, store results in tables, and automate batch workflows for high-content screening.

Academic Paper Transformations

K-Dense-AI/claude-scientific-skills

Transforms LaTeX or PDF papers into interactive websites, narrated videos, and print-ready posters via the Paper2All pipeline, ideal for conference preparation, research promotion, and explorable academic showcases.

Python Lab Automation Framework for Robotics

K-Dense-AI/claude-scientific-skills

PyLabRobot is a vendor-agnostic, pure Python SDK designed for autonomous and automated laboratory workflows. It provides a unified interface to control a wide array of laboratory equipment, including liquid handling robots (Hamilton, Opentrons, Tecan), plate readers, pumps, shakers, and incubators. Ideal for developing complex, multi-device, reproducible protocols and simulating experiments before physical execution.

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