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Biopython Molecular Toolkit

K-Dense-AI/claude-scientific-skills

Biopython provides Python APIs for sequence manipulation, database access, BLAST automation, structural bioinformatics, and phylogenetics, making it ideal for scripting custom pipelines and batch processing in computational molecular biology workflows.

Datamol Cheminformatics Helper

K-Dense-AI/claude-scientific-skills

Datamol wraps RDKit with Pythonic APIs tailored for drug discovery, offering SMILES/SELFIES/InChI parsing, standardization, descriptor and fingerprint calculation, clustering, 3D conformer workflows, and parallel/cloud-aware batch I/O while returning native rdkit.Chem.Mol objects.

DiffDock Pose Predictor

K-Dense-AI/claude-scientific-skills

DiffDock uses diffusion-based deep learning to predict protein-ligand binding poses, confidence, and batch virtual screening workflows for structure-based drug design.

NCBI Gene Explorer

K-Dense-AI/claude-scientific-skills

Access NCBI Gene data via E-utilities or Datasets API to look up genes by symbol or ID, retrieve RefSeqs, GO terms, chromosomal locations, phenotypes, and run batch workflows for annotation pipelines.

AI Image Generator

K-Dense-AI/claude-scientific-skills

Generate or edit high-quality photos, illustrations, and visual assets using OpenRouter models like Gemini 3.1 Flash and Flux 2 Pro; configure the API key once, then run the scripts for prompts, edits, or batch outputs for presentations, marketing, or general creative needs.

Modal Cloud GPU Platform

K-Dense-AI/claude-scientific-skills

Modal delivers cloud-native serverless Python with on-demand GPUs, persistent storage, and web endpoints to deploy ML workloads, batch jobs, and APIs without writing Dockerfiles.

OMERO Microscopy Integration

omero-integration

K-Dense-AI/claude-scientific-skills

Manage microscopy data with the OMERO Python API: access projects/datasets/images, retrieve and analyze pixel data, handle ROIs and annotations, store results in tables, and automate batch workflows for high-content screening.

PDB Structure Explorer

K-Dense-AI/claude-scientific-skills

Access RCSB PDB to search biomolecular structures via text, sequence, or geometry queries, download coordinate files in PDB/mmCIF/Binary formats, retrieve metadata, and batch-process entries for drug discovery, protein engineering, and structural biology pipelines.

Cloud Molecular Modeling Workflows

K-Dense-AI/claude-scientific-skills

Cloud-native Rowan orchestrates medicinal chemistry and molecular modeling pipelines via a Python API, offering pKa prediction, docking, descriptors, dynamics, and AI-driven structure workflows for scalable batch screening without local HPC.

Single-Cell Generative Toolkit

K-Dense-AI/claude-scientific-skills

Probabilistic deep-learning framework built on PyTorch for single-cell omics; handles batch correction, integration, multimodal and spatial data, differential expression, and transfer learning with unified APIs.

Mermaid Diagram Studio

tech-leads-club/agent-skills

Creates and validates Mermaid diagrams across 20+ types, renders SVG/PNG/ASCII, enforces curated styling, and supports batch rendering with themes; ideal for architecture, flow, and ERD visualization requests.

Uncategorized Transaction Tidy

davepoon/buildwithclaude

Batch-categorize uncategorized transactions by clustering similar descriptions, researching unknown merchants, and creating rules or annotations so future payments auto-classify with minimal manual review.

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