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PubMed Database Access

pubmed-database

K-Dense-AI/claude-scientific-skills

Direct REST/API access to PubMed for constructing complex Boolean or MeSH queries, filtering by publication attributes, and automating literature retrieval or citation management via NCBI’s E-utilities.

Hardware Agnostic Lab Automation

K-Dense-AI/claude-scientific-skills

PyLabRobot is a Python SDK that controls liquid handlers, plate readers, pumps and other lab automation devices through one unified API, ideal for multi-vendor workflows, simulations, and reproducible protocols across platforms.

Materials Structure Toolkit

K-Dense-AI/claude-scientific-skills

Pymatgen is a Python toolkit for computational materials science that creates, manipulates, and analyzes crystal structures, converts among 100+ formats, computes phase diagrams, and accesses Materials Project data for high-throughput workflows.

Therapeutics Data Commons

K-Dense-AI/claude-scientific-skills

PyTDC offers curated AI-ready datasets, standardized benchmarks, and scaffold-aware splits across ADME, toxicity, interaction, and generation tasks to support therapeutic ML and pharmacological prediction workflows.

Qiskit Quantum Framework

K-Dense-AI/claude-scientific-skills

Bridge circuit design, optimization, visualization, and IBM Quantum execution with Qiskit. Install via pip, compose circuits, transpile for hardware, run on simulators or cloud backends, and analyze histograms or quantum states.

Research Grant Proposals

research-grants

K-Dense-AI/claude-scientific-skills

Craft competitive research grant proposals for NSF, NIH, DOE, DARPA, and NSTC with agency-specific narratives, budgets, broader impact statements, and mandatory AI-generated schematics for methodology/plan visuals.

Research Lookup Router

research-lookup

K-Dense-AI/claude-scientific-skills

Automatic research lookup routing that picks Parallel Chat API for general inquiries and Perplexity sonic search for academic papers, making it ideal for finding studies, verifying claims, gathering market data, or sourcing citations for documentation.

Rowan Quantum Chemistry

K-Dense-AI/claude-scientific-skills

Rowan delivers cloud-based quantum chemistry via a Python API for pKa estimation, geometry optimization, conformer search, docking, and AI protein cofolding, giving scientists remote compute and automation for molecular workflows without local setup.

Scholar Evaluation Framework

scholar-evaluation

K-Dense-AI/claude-scientific-skills

Systematically evaluate academic papers, proposals, and reviews using the ScholarEval framework, scoring problem definition, methodology, analysis, writing, and citations while generating structured feedback and diagram prompts for publication-ready presentations.

Scientific Brainstorming Guide

scientific-brainstorming

K-Dense-AI/claude-scientific-skills

Guides collaborative, cross-disciplinary brainstorming to generate research hypotheses, explore analogies, challenge assumptions, and map next steps, ideal for early-stage scientific planning before specific observations exist.

Scientific Critical Thinking

scientific-critical-thinking

K-Dense-AI/claude-scientific-skills

Assess scientific claims by reviewing study design, statistical validity, and bias using GRADE and Cochrane frameworks, helping researchers or reviewers grade evidence quality and spot methodological flaws before drawing conclusions.

Scientific Diagram Generator

scientific-schematics

K-Dense-AI/claude-scientific-skills

Generates publication-quality scientific diagrams through Nano Banana 2 AI with Gemini 3.1 Pro reviewing quality against document-specific thresholds, iterating only when necessary for journals, posters, presentations, or technical reports.

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