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Search Data Analysis , found 92 results

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GEO Data Retriever

K-Dense-AI/claude-scientific-skills

Connect to NCBI's GEO repository, search series/samples/platforms via Entrez queries, fetch profiles, and download raw/processed matrices using GEOparse for transcriptomics and expression analysis workflows.

Histolab Tile Toolkit

K-Dense-AI/claude-scientific-skills

Histolab automates tissue detection, tile extraction, and stain normalization on whole slide images so researchers can prep datasets and run lightweight pipelines before diving into advanced spatial or multiplexed analysis.

Automated Hypothesis Discovery

K-Dense-AI/claude-scientific-skills

Automates hypothesis generation and testing on tabular datasets by blending LLM-driven data insights with literature synthesis, enabling researchers to explore patterns, validate competing claims, and surface non-redundant ideas across domains like deception detection or content analysis.

KEGG REST Toolkit

K-Dense-AI/claude-scientific-skills

Direct Python helpers for KEGG's REST API, covering database metadata, listing, search, retrieval, ID conversion, linkage, and drug interactions to power pathway and gene analysis.

Strategic Market Reports

market-research-reports

K-Dense-AI/claude-scientific-skills

Generate 50+ page, consulting-caliber market research reports with LaTeX/PDF output, multi-framework strategic analysis (TAM/SAM/SOM, Porter, SWOT, BCG, PESTLE), heavy visual generation, and data-backed insights for investment, entry, and go-to-market decisions.

Network Analysis Toolkit

K-Dense-AI/claude-scientific-skills

Provides Python-based tools for building, analyzing, and visualizing graph or network data, covering creation, algorithms (shortest paths, centrality, communities), generation, I/O, and rendering for domains like social, biological, or transport systems.

Neuropixels Recording Analysis

neuropixels-analysis

K-Dense-AI/claude-scientific-skills

Toolkit for Neuropixels neural recording analysis that loads SpikeGLX/Open Ephys/NWB data, preprocesses, corrects motion, runs Kilosort4/alternative sorters, computes quality metrics, curates units via Allen/IBL criteria, renders visualizations, and exports to Phy or NWB for publication-ready results.

Reactome Pathway Explorer

reactome-database

K-Dense-AI/claude-scientific-skills

Query the Reactome Content and Analysis Services (or the reactome2py client) to fetch pathway hierarchies, map genes, run overrepresentation/expression analyses, and explore disease interactions for systems biology research.

Scanpy Single-Cell Pipeline

K-Dense-AI/claude-scientific-skills

Scanpy provides a scalable Python pipeline for single-cell RNA-seq, covering QC, normalization, dimensionality reduction, clustering, marker discovery, annotation, trajectory analysis, and publication-ready visualizations through AnnData.

Survival Analysis Toolkit

scikit-survival

K-Dense-AI/claude-scientific-skills

Comprehensive scikit-survival guidance for handling censored data, building Cox, ensemble, and SVM survival models, and evaluating time-to-event predictions with concordance, AUC, and Brier scores, making it ideal for clinical or reliability studies in Python.

STRING Protein Interaction

string-database

K-Dense-AI/claude-scientific-skills

Query the STRING REST API to retrieve protein-protein interaction networks, map identifiers, visualize evidence-weighted edges, and run GO/KEGG/Pfam enrichment for systems biology analysis.

Social Audience Intelligence

apify-audience-analysis

sickn33/antigravity-awesome-skills

Automate multi-platform audience research by selecting Apify Actors to scrape Facebook, Instagram, YouTube, and TikTok engagement, demographics, and behavior data, then summarize insights or export results in chat, CSV, or JSON.

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