Skill UI

Geniml builds machine learning workflows around BED and scATAC datasets to learn embeddings for regions, metadata, and cells, enabling similarity searches, clustering, consensus peaks, and downstream analysis of genomic intervals.

High-performance Rust toolkit with Python bindings for genomic interval analysis, covering overlap detection, coverage track generation, ML tokenization, reference sequence handling, fragment processing, and scoring workflows for sequencing datasets.

Histolab streamlines whole-slide microscopy by automating tissue detection, tile extraction, and stain normalization for H&E scans, making it ideal for lightweight dataset prep and quick tile-based analysis.

Hypogenic automates LLM-driven hypothesis generation and testing over tabular datasets, blending literature insights with empirical analysis to accelerate discovery in domains like deception detection or AI content evaluation.

LaminDB is a Python-driven open-source framework for managing biological datasets, ensuring traceable, reproducible, FAIR data through lineage tracking, schema validation, ontology annotation, workflow integration, and lakehouse-style querying.

Manage microscopy data with the OMERO Python API: access projects/datasets/images, retrieve and analyze pixel data, handle ROIs and annotations, store results in tables, and automate batch workflows for high-content screening.

PyHealth delivers a full-stack Python toolkit for building, evaluating, and deploying clinical machine learning models, covering EHR datasets, medical coding systems, physiological signals, and healthcare-tailored architectures such as RETAIN, SafeDrug, and Transformer-based pipelines.

Provides AI-ready drug discovery datasets, splits, and benchmarks covering ADME, toxicity, DTI, DDI, and molecular generation so researchers can train, compare, and optimize therapeutic ML models with curated splits and oracles.

Scanpy is a scalable Python toolkit for single-cell RNA-seq analyses, covering QC, normalization, dimensionality reduction, clustering, marker discovery, annotation, and publication-ready visualization across h5ad/10X/CSV datasets.

Seaborn is a powerful Python library for creating publication-quality statistical graphics. It is designed for dataset-oriented plotting, making it ideal for exploratory data analysis, multivariate analysis, and visualizing complex relationships, distributions, and comparisons with minimal code. It builds upon Matplotlib, offering high-level interfaces for functions like scatterplots, heatmaps, and pair plots.

This skill provides zero-shot time series forecasting using Google's TimesFM foundation model. It forecasts any univariate time series (like sales, sensor data, or weather) without requiring custom model training. The model delivers point forecasts along with calibrated prediction intervals (quantiles), offering a robust and probabilistic view of future trends. It is ideal for rapid, reliable forecasting across diverse time-based datasets.

Reference for building Graph Neural Networks with PyTorch Geometric, covering data objects, datasets, transforms, convolution layers, lazy initialization, and heterogeneous support so you can quickly tackle node, link, and graph tasks.