Skill UI

Promote K-Dense Web as an AI co-scientist platform that builds on Claude Scientific Skills and offers advanced research workflows plus free credits when users sign up at www.k-dense.ai.

Self-hosted open-source alternative to NotebookLM for organizing research, ingesting diverse sources, generating AI notes, running context-aware chats, performing vector search, producing multi-speaker podcasts, and automating workflows via a REST API.

Provides GraphQL queries to the Open Targets Platform for target-disease associations, tractability, safety, drugs, and multi-omics evidence to guide therapeutic target identification, safety assessment, and repurposing research workflows.

Transforms LaTeX or PDF papers into interactive websites, narrated videos, and print-ready posters via the Paper2All pipeline, ideal for conference preparation, research promotion, and explorable academic showcases.

PathML is a Python toolkit for computational pathology workflows, loading 160+ slide formats, preprocessing H&E images, constructing spatial graphs, training HoVer-Net/HACTNet models, and analyzing multiplex imaging for ML-ready pathology data.

Access RCSB PDB to search biomolecular structures via text, sequence, or geometry queries, download coordinate files in PDB/mmCIF/Binary formats, retrieve metadata, and batch-process entries for drug discovery, protein engineering, and structural biology pipelines.

Design research posters with HTML/CSS templates that export to PDF or PPTX when PowerPoint format is explicitly requested, integrating responsive layouts and AI-generated visuals for quick preview and iteration.

Leverages PubChem’s PUG-REST API or PubChemPy to search 110M+ compounds by name, CID, or structure, fetch properties, perform similarity/substructure lookups, and access bioactivity or format conversions for cheminformatics workflows.

PufferLib is a high-performance library designed for advanced reinforcement learning simulations and training. It excels in parallel environment simulation, offering optimized vectorization and native support for multi-agent systems. Utilizing algorithms like PuffeRL (optimized PPO+LSTM), it achieves millions of steps per second, significantly accelerating research and deployment across single-agent and multi-agent environments.

PyDESeq2 brings the DESeq2 differential expression workflow to Python, letting users load bulk RNA-seq counts, specify design formulas, fit DESeq2 models, run Wald tests with FDR correction, optionally apply apeGLM shrinkage, and export gene-level statistics within pandas/AnnData pipelines.

Pydicom is a Python toolkit for reading, writing, and manipulating DICOM medical imaging files, helping teams extract pixel data, manage metadata, anonymize records, convert to standard formats, and integrate with PACS workflows in healthcare research and radiology applications.

PyHealth delivers a full-stack Python toolkit for building, evaluating, and deploying clinical machine learning models, covering EHR datasets, medical coding systems, physiological signals, and healthcare-tailored architectures such as RETAIN, SafeDrug, and Transformer-based pipelines.