Skill UI

This specialized skill traces the complete lifecycle of an uploaded or imported file through complex backend systems. It maps the sequence from ingress to final consumer, tracking every derived artifact, archive extraction, format conversion, parser invocation, and deserialization step. It is crucial for security analysis, vulnerability research, and understanding how a file reaches a decisive backend effect after initial sandbox assumptions are made.

This skill guides the creation of computable phenotypes and patient cohorts using the OHDSI/OMOP CDM standards. It allows users to define precise, executable criteria by combining standard concept sets (like PheKB) with advanced Natural Language Processing (NLP) features extracted from free clinical text. Use this when structured codes alone are insufficient to capture critical health information (e.g., symptoms, social context).

A powerful, on-device tool for removing, masking, or replacing sensitive Protected Health Information (PHI/PII) from clinical free text. It ensures patient privacy by running fully locally, supporting methods like masking, hashing, and date shifting. Essential for preparing medical records for safe sharing, storage, or analysis, adhering to standards like HIPAA and GDPR.

Generates high-quality, structured technical documentation for READMEs, APIs, and architecture guides, adhering to progressive disclosure principles. It also specializes in creating formal, evidence-backed security reports for penetration testing, CTF writeups, and reverse engineering tasks, ensuring a professional, reusable format.

This skill implements a comprehensive logging guard to prevent Protected Health Information (PHI) leakage into logs, traces, and error reports. It acts as a pre-emission filter, redacting structured identifiers (SSN, email, phone) via regex and handling free-text PHI using advanced models. Essential for maintaining strict data privacy and compliance when shipping logs to centralized stores or error trackers.

This skill evaluates de-identification and clinical NER models against rigorous leakage-first release gates (G1a-G8). Instead of relying on aggregate F1 scores, it focuses on detecting residual Protected Health Information (PHI) leakage and enforcing per-label recall floors, which is crucial for HIPAA compliance. Determines if a model is RELEASABLE or QUARANTINED.

Use openmed.extract_pii to detect and retrieve specific types of Protected Health Information (PHI) or Personally Identifiable Information (PII) spans (names, dates, MRNs, etc.) from clinical text. Unlike deidentification, this function returns the original text and the detected spans, allowing users to audit, preview redactions, normalize labels, or route spans to a custom anonymizer without altering the source data. It is ideal for pre-processing and policy enforcement.

This skill implements a critical CI gate to ensure the privacy and performance integrity of de-identification models. It automatically fails the build if the model's recall on held-out PHI data drops below the defined threshold, or if any critical Personally Identifiable Information (PHI) is leaked (leakage must be zero). It enforces strict privacy standards in continuous integration pipelines, blocking unsafe merges.

Synthea generates statistically realistic, fully synthetic patient records in multiple standards (FHIR R4, C-CDA, CSV). This tool is essential for developers and researchers needing safe, shareable test data for OpenMed pipelines, CI fixtures, or specialized de-identification leakage gate test sets. It ensures zero risk of exposing real Protected Health Information (PHI).

This skill replaces detected Protected Health Information (PHI) in clinical notes with realistic, type-matched synthetic surrogates. Unlike simple redaction, surrogates maintain the natural readability and structure of the text, ensuring the data remains parseable for downstream NLP tasks, QA, or human review. It supports consistent, reproducible fake identities and allows custom identifier generation for proprietary formats.

Automatically transforms raw CHANGELOG entries into polished, multi-format social media announcements. It generates content tailored for LinkedIn, Twitter/X, Newsletters, and Slack, supporting both English and French. Ideal for creating structured release notes, weekly summaries, and professional product announcements to boost developer visibility and user engagement.

This module converts diverse clinical inputs—including scanned images, faxes, CSV/TSV exports, and C-CDA XML—into a normalized, clean text format (`ExtractedDocument`). It supports on-device OCR (Tesseract/PaddleOCR) and structured redaction for tables. It is the crucial first stage for feeding de-identification and Named Entity Recognition (NER) pipelines.