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Video Download Assistant

video-downloader

Prat011/awesome-llm-skills

Downloads YouTube and other platform videos for offline viewing, editing, or archiving, letting you batch download, pick resolutions, and preserve metadata in MP4, WebM, or audio-only formats.

WordPress Penetration Testing

wordpress-penetration-testing

sickn33/antigravity-awesome-skills

Guides security pros through WordPress 7.0 attack surfaces covering discovery, enumeration, vulnerability scanning, credential checks, and exploitation with WPScan, Burp, Metasploit, and manual curl probes for authorized assessments.

Annotated Matrix Data Tool

K-Dense-AI/claude-scientific-skills

AnnData offers a Python-native structure for storing annotated matrices with observations, variables, multi-dimensional metadata, and optimized IO, making it ideal for single-cell and large-scale bioinformatics workflows.

Structured Paper Search

bgpt-paper-search

K-Dense-AI/claude-scientific-skills

BGPT Paper Search queries the BGPT MCP server for scientific publications, returning structured metadata such as methods, quantitative results, sample sizes, and quality scores for each full-text study to support reviews, meta-analyses, and evidence synthesis.

bioRxiv Preprint Search

biorxiv-database

K-Dense-AI/claude-scientific-skills

Enables efficient querying of the bioRxiv preprint server with keywords, authors, dates, and categories, returning structured JSON metadata and optional PDF downloads for literature reviews or tracking research trends.

BRENDA Enzyme Explorer

brenda-database

K-Dense-AI/claude-scientific-skills

Access the BRENDA SOAP API to retrieve enzyme kinetic parameters, reaction equations, organism-specific data, and environmental preferences, enabling biochemical research, metabolic pathway reconstruction, and enzyme engineering workflows.

Cellxgene Census API

cellxgene-census

K-Dense-AI/claude-scientific-skills

Programmatically query the 61M+ CELLxGENE Census atlas to access curated single-cell expression matrices, metadata, and embeddings for tissue, disease, and cell type exploration or ML-ready datasets.

Citation Management Assistant

citation-management

K-Dense-AI/claude-scientific-skills

Automates academic citation management by searching Google Scholar and PubMed, extracting metadata from DOIs/PMIDs/arXiv, validating references, and generating properly formatted BibTeX entries to keep research writing accurate.

COBRApy Metabolic Modeling

K-Dense-AI/claude-scientific-skills

COBRApy is a Python library for constraint-based reconstruction and analysis of metabolic networks, offering SBML-compatible model loading/saving, FBA/FVA optimization, genetic or reaction knockouts, flux sampling, and production envelope analysis for systems biology and metabolic engineering.

Scientific Data Exploration

exploratory-data-analysis

K-Dense-AI/claude-scientific-skills

Automates exploratory analysis for 200+ scientific file formats—detecting type, extracting metadata, assessing quality, and producing markdown reports with format-specific insights and recommendations.

FlowIO FCS Handler

K-Dense-AI/claude-scientific-skills

Lightweight Python library to read, inspect, and write FCS v2.0-3.1 files, outputting metadata, channel info, and NumPy arrays for preprocessing cytometry pipelines and backend services.

Genomic Interval ML

K-Dense-AI/claude-scientific-skills

Geniml is a Python toolkit for applying machine learning to genomic interval data (BED/scATAC-seq), offering region and metadata embeddings, universe-building, and utilities for downstream similarity search, clustering, and evaluation.

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