Skill UI

An autonomous research agent that plans complex investigations using Directed Acyclic Graphs (DAGs). It executes sub-questions in parallel, performs gap analysis, and iteratively refines findings before synthesizing a comprehensive, structured report. Ideal for deep market analysis, academic literature reviews, or complex problem-solving requiring multiple data sources.

DeepTools is a comprehensive command-line toolkit for processing and analyzing high-throughput sequencing data. It supports workflows for ChIP-seq, RNA-seq, ATAC-seq, and other NGS experiments. Core capabilities include converting BAM files to normalized coverage tracks (bigWig), performing quality control (QC), sample correlation analysis, and generating publication-quality visualizations, such as heatmaps and profile plots across genomic regions.

Geniml is a comprehensive Python package designed for applying machine learning models to genomic interval data, typically stored in BED files. It provides several unsupervised methods—including Region2Vec and BEDspace—to learn robust embeddings of genomic regions, single cells (scATAC-seq), and associated metadata. Use cases include dimensionality reduction, structural variation analysis, cell-type annotation, and cross-modal querying in genomics research.

Gtars is a high-performance toolkit written in Rust with Python bindings, designed for comprehensive analysis of genomic interval data. It provides specialized modules for overlap detection, generating coverage tracks (WIG/BigWig), tokenization for Machine Learning models, and detailed fragment analysis in single-cell genomics. Use it for robust bioinformatics pipelines and computational genomics research.

Molfeat is a comprehensive Python library designed for molecular featurization. It converts chemical structures (SMILES/RDKit) into numerical feature vectors, supporting over 100 featurizers like ECFP, MACCS, and deep embeddings (ChemBERTa). It unifies featurization pipelines, making it ideal for QSAR modeling, virtual screening, and integrating into deep learning ML workflows.

An end-to-end toolkit designed for analyzing high-density Neuropixels electrophysiology recordings. It implements best practices using SpikeInterface, covering the entire workflow: data loading (SpikeGLX, NWB), preprocessing, motion/drift correction, advanced spike sorting (Kilosort4), quality metric computation, and unit curation (including AI-assisted review). Ideal for neuroscience research.

UMAP (Uniform Manifold Approximation and Projection) is a powerful technique for non-linear dimensionality reduction. This skill enables the creation of scalable, structure-preserving embeddings (2D/3D) for visualization, clustering preprocessing, and advanced machine learning feature engineering. It supports various metrics (e.g., Euclidean, Cosine) and supervised learning workflows.

The AI Dev Jobs MCP provides AI agents with real-time access to a massive index of AI and Machine Learning job listings across hundreds of companies. Users can search by role, location, or company, retrieve full job details, analyze salary ranges, list hiring companies, and get aggregate market statistics. It is essential for advanced job searching, talent matching, and labor market analysis workflows.

A comprehensive guide to setting up robust CI/CD pipelines for Algolia indexing. This includes running unit and integration tests against live indices, validating index settings against defined configurations, and implementing automated reindexing upon deployment (e.g., triggering on version tags). It ensures the stability and data consistency of your search service.

This comprehensive tutorial guides developers through setting up and utilizing Algolia for advanced search functionality. It covers fundamental operations such as indexing records using `saveObjects`, performing targeted searches, and configuring index settings (like custom ranking and faceting). The guide also demonstrates advanced use cases, including multi-index federation and browsing all records, making it ideal for developers building or optimizing a search backend.

A comprehensive guide to minimizing expenses when utilizing the Anthropic Claude API. Learn advanced strategies including right-sizing models (Haiku, Sonnet, Opus), prompt caching (up to 90% savings), message batching, and effective token reduction techniques. Essential for building cost-efficient AI applications.

A foundational guide to interacting with the Fathom API. This skill demonstrates essential use cases, including listing meetings, fetching detailed transcripts, and retrieving AI-generated summaries and action items. It is ideal for initial API testing, validating connectivity, or understanding the Fathom data response structure.