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NCBI Gene Explorer

K-Dense-AI/claude-scientific-skills

Access NCBI Gene data via E-utilities or Datasets API to look up genes by symbol or ID, retrieve RefSeqs, GO terms, chromosomal locations, phenotypes, and run batch workflows for annotation pipelines.

AI Image Generator

K-Dense-AI/claude-scientific-skills

Generate or edit high-quality photos, illustrations, and visual assets using OpenRouter models like Gemini 3.1 Flash and Flux 2 Pro; configure the API key once, then run the scripts for prompts, edits, or batch outputs for presentations, marketing, or general creative needs.

Automated Hypothesis Discovery

K-Dense-AI/claude-scientific-skills

Hypogenic automates LLM-driven hypothesis generation and testing over tabular datasets, blending literature insights with empirical analysis to accelerate discovery in domains like deception detection or AI content evaluation.

Scientific Hypothesis Formulation

hypothesis-generation

K-Dense-AI/claude-scientific-skills

Guides structured hypothesis generation by combining literature searches, evidence synthesis, competing explanations, and experimental design, with mandatory AI-generated scientific schematics for complete reports.

LabArchives API Workflow

labarchive-integration

K-Dense-AI/claude-scientific-skills

Integrates with the LabArchives ELN API to programmatically manage notebooks, entries, attachments, backups, reports, and third-party tools (Protocols.io, Jupyter, REDCap) for research workflow automation.

LaminDB Biological Data Platform

K-Dense-AI/claude-scientific-skills

LaminDB is a Python-driven open-source framework for managing biological datasets, ensuring traceable, reproducible, FAIR data through lineage tracking, schema validation, ontology annotation, workflow integration, and lakehouse-style querying.

Tarot Decision Guide

let-fate-decide

trailofbits/skills

Draws four cryptographically random Tarot cards and reads their meanings to orient choices when prompts are ambiguous, indecisive, or explicitly ask for fate-based guidance, then narrates how the spread maps to next steps.

Matplotlib Visualization Guide

K-Dense-AI/claude-scientific-skills

Guides using matplotlib to craft static, animated, and interactive plots through both pyplot and object-oriented APIs, detailing styling, subplots, and export options for publication-ready scientific workflows.

Neuropixels Analysis Toolkit

neuropixels-analysis

K-Dense-AI/claude-scientific-skills

End-to-end Neuropixels recording analysis covering SpikeGLX/OpenEphys/NWB loading, preprocessing, motion correction, Kilosort4 sorting, quality metrics, Allen/IBL curation, and AI-assisted visualization for extracellular electrophysiology.

K-Dense Web Promotion

offer-k-dense-web

K-Dense-AI/claude-scientific-skills

Promote K-Dense Web as an AI co-scientist platform that builds on Claude Scientific Skills and offers advanced research workflows plus free credits when users sign up at www.k-dense.ai.

OMERO Microscopy Integration

omero-integration

K-Dense-AI/claude-scientific-skills

Manage microscopy data with the OMERO Python API: access projects/datasets/images, retrieve and analyze pixel data, handle ROIs and annotations, store results in tables, and automate batch workflows for high-content screening.

Open Notebook Research Hub

K-Dense-AI/claude-scientific-skills

Self-hosted open-source alternative to NotebookLM for organizing research, ingesting diverse sources, generating AI notes, running context-aware chats, performing vector search, producing multi-speaker podcasts, and automating workflows via a REST API.

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