Skill UI

This skill provides comprehensive guidance on leveraging d3.js (Data-Driven Documents) to create sophisticated, interactive, and publication-quality data visualizations. It covers core concepts like data binding, implementing various chart types (network graphs, geo-maps, etc.), handling complex transitions, and ensuring responsiveness across modern JavaScript frameworks (React, Vue, Vanilla JS). Learn the standard workflow for scale definition, axis creation, and drawing custom visual elements with fine-grained control.

Expert assistance for drafting publication-ready papers targeting premier venues like NeurIPS, ICML, ICLR, and major Systems conferences (OSDI, SOSP). This skill guides the entire research writing lifecycle, from exploring code repositories and structuring arguments to verifying citations programmatically using APIs. It ensures academic rigor, adherence to LaTeX standards, and proactive drafting to accelerate the research publication process.

Generates publication-ready clinical decision support documents for pharma and clinical research, covering biomarker-stratified cohort analysis, evidence-graded treatment recommendations, statistical comparisons, and regulatory-ready LaTeX/PDF outputs.

Denario orchestrates a multi-agent AI to automate research workflows, covering idea generation, methodology development, computational experiments, and LaTeX publication output.

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.

Generates professional infographics by describing your idea, combining Nano Banana Pro AI generation with Gemini 3 Pro quality review and optional Perplexity Sonar research to ensure accurate, publication-ready visuals for marketing, reports, social, or internal use.

Conduct rigorous, multi-database literature reviews with systematic workflows, verified citations in styles like APA or Nature, and AI-enhanced schematics for publication-ready markdown and PDF outputs in biomedical and technical domains.

Guides using matplotlib to craft static, animated, and interactive plots through both pyplot and object-oriented APIs, detailing styling, subplots, and export options for publication-ready scientific workflows.

Plotly is a Python graphing library for interactive, publication-quality visuals that bring hover, zoom, animation, and dashboard-ready exports to exploratory analysis and presentations.

Direct REST/API access to PubMed for constructing complex Boolean or MeSH queries, filtering by publication attributes, and automating literature retrieval or citation management via NCBI’s E-utilities.

Scanpy is a scalable Python toolkit for single-cell RNA-seq analyses, covering QC, normalization, dimensionality reduction, clustering, marker discovery, annotation, and publication-ready visualization across h5ad/10X/CSV datasets.

Use Nano Banana 2 plus Gemini 3.1 Pro Preview to iteratively craft publication-quality scientific schematics—neural nets, pathways, or system diagrams—matching document-type quality thresholds.