Skill UI

Scanpy is a scalable Python toolkit for single-cell RNA-seq analyses, covering QC, normalization, dimensionality reduction, clustering, marker discovery, annotation, and publication-ready visualization across h5ad/10X/CSV datasets.

scikit-bio provides a Python-native biological data toolkit for reading/writing FASTA/Newick files, manipulating sequences, building alignments and phylogenies, and calculating diversity metrics for microbiome and ecology workflows.

Toolkit for Python-based survival and time-to-event modeling with scikit-survival, supporting Cox models, ensemble learners, SVMs, and evaluation metrics for censored data.

Seaborn is a powerful Python library for creating publication-quality statistical graphics. It is designed for dataset-oriented plotting, making it ideal for exploratory data analysis, multivariate analysis, and visualizing complex relationships, distributions, and comparisons with minimal code. It builds upon Matplotlib, offering high-level interfaces for functions like scatterplots, heatmaps, and pair plots.

SimPy is a powerful, process-based discrete-event simulation framework written in Python. It is designed for modeling complex systems where entities interact with shared resources and time-based events occur, such as manufacturing lines, service queues, network traffic, or logistics networks. Use this skill to analyze resource contention, simulate process optimization, conduct capacity planning, and model dynamic system behaviors.

Statsmodels is a comprehensive Python library dedicated to advanced statistical modeling and econometrics. It provides tools for rigorous statistical inference, including Ordinary Least Squares (OLS), Generalized Linear Models (GLM), mixed-effects models, and time series analysis (ARIMA). Use this skill for detailed diagnostics, coefficient estimation, hypothesis testing, and producing publication-ready statistical reports in fields like econometrics and biostatistics.

Guides symbolic mathematics work in Python, covering algebraic simplification, calculus, equation solving, linear algebra, physics, number theory, geometry, and code generation to deliver exact symbolic results instead of numeric approximations.

Direct REST API access to UniProt for searching proteins, fetching FASTA sequences, mapping identifiers, selecting annotations, and streaming large datasets within Python workflows.

Provides access to USPTO PatentSearch, PEDS, TSDR, and related APIs for patent and trademark searches, examination history, assignments, citations, and litigation data, with helper scripts for Python-based IP research and portfolio insights.

Vaex is a high-performance Python library for lazy out-of-core DataFrames that process billions of rows without RAM. Use it to analyze massive CSV/HDF5/Arrow/Parquet tables, compute fast statistics, visualize big data, and build scikit-learn pipelines.

Zarr is a Python toolkit for chunked N-D array storage with compression, sharding, and native integrations with NumPy/Dask/Xarray, ideal for parallel I/O and scalable cloud pipelines.

A robust Python client wrapper for interacting with the Zotero Web API v3. This skill allows users to programmatically manage academic references, including retrieving, creating, updating, and deleting items, collections, tags, and attachments. Ideal for academic researchers building automated workflows, bulk exporting citations (e.g., BibTeX), or integrating Zotero data into larger research applications.