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Phylogenetic Tree Toolkit

K-Dense-AI/claude-scientific-skills

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.

Scientific Data Exploration

exploratory-data-analysis

K-Dense-AI/claude-scientific-skills

Automates detection and deep exploratory analysis across 200+ scientific data formats, assessing quality, extracting metadata, and recommending visualizations while generating markdown reports that guide downstream workflows and highlight structure and distributions.

FDA Regulatory Data Access

K-Dense-AI/claude-scientific-skills

Provides Python access to openFDA endpoints for drugs, devices, foods, veterinary products, and substances, enabling regulatory analysis, safety monitoring, recalls tracking, and pharmacovigilance research.

FlowIO FCS Handler

K-Dense-AI/claude-scientific-skills

FlowIO reads and writes Flow Cytometry Standard (FCS) files, exposing metadata, channels, and NumPy event arrays while allowing CSV/DataFrame conversion, making it ideal for cytometry pipelines and backend preprocessing services.

FluidSim CFD Framework

K-Dense-AI/claude-scientific-skills

FluidSim is a Python-based CFD framework offering pseudospectral solvers (2D/3D Navier-Stokes, shallow water, stratified flows) with FFT, MPI, Pythran/Transonic acceleration, and rich output analysis for turbulence or geophysical studies.

FRED Economic Data API

fred-economic-data

K-Dense-AI/claude-scientific-skills

Access over 800,000 economic time series from FRED's API, covering GDP, employment, inflation, interest rates, regional metrics, and more; ideal for macroeconomic analysis, financial research, policymaking, and forecasting workflows.

NCBI Gene Explorer

K-Dense-AI/claude-scientific-skills

Access NCBI Gene data via E-utilities or Datasets API to look up genes by symbol or ID, retrieve RefSeqs, GO terms, chromosomal locations, phenotypes, and run batch workflows for annotation pipelines.

AI Image Generator

K-Dense-AI/claude-scientific-skills

Generate or edit high-quality photos, illustrations, and visual assets using OpenRouter models like Gemini 3.1 Flash and Flux 2 Pro; configure the API key once, then run the scripts for prompts, edits, or batch outputs for presentations, marketing, or general creative needs.

Genomic Interval Embeddings

K-Dense-AI/claude-scientific-skills

Geniml builds machine learning workflows around BED and scATAC datasets to learn embeddings for regions, metadata, and cells, enabling similarity searches, clustering, consensus peaks, and downstream analysis of genomic intervals.

GEO Data Retriever

K-Dense-AI/claude-scientific-skills

Connect to NCBI's GEO repository, search series/samples/platforms via Entrez queries, fetch profiles, and download raw/processed matrices using GEOparse for transcriptomics and expression analysis workflows.

GeoPandas Spatial Toolkit

K-Dense-AI/claude-scientific-skills

GeoPandas extends pandas for geospatial vector data, enabling reading/writing shapefiles, GeoJSON, GeoPackage and PostGIS, performing CRS management, spatial joins, overlays, buffering, area/distance calculations, and producing static or interactive choropleth maps.

Resource Detection For Science

get-available-resources

K-Dense-AI/claude-scientific-skills

Detects system CPU, GPU, memory, and disk availability before heavy scientific tasks, writing `.claude_resources.json` with strategic recommendations (parallelism, out-of-core, GPU acceleration) so analysts choose appropriate compute approaches.

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