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ChEMBL Bioactivity Query

chembl-database

K-Dense-AI/claude-scientific-skills

Programmatically query ChEMBL bioactive molecules, targets, and approved drugs via the Python client; filter by structure, properties, activities, and indications to support inhibitor hunting or SAR studies for medicinal chemistry.

Molecular ML Toolkit

K-Dense-AI/claude-scientific-skills

DeepChem is a Python library for molecular machine learning, providing featurizers, dataset loaders, splitters, and models spanning traditional ML to GNNs for property prediction, drug discovery, and materials design.

ENA Sequence Access

K-Dense-AI/claude-scientific-skills

Access the European Nucleotide Archive via REST/FTP to fetch DNA/RNA sequences, raw reads, assemblies, annotations, and taxonomy for research or bioinformatics pipelines.

GeoPandas Spatial Toolkit

K-Dense-AI/claude-scientific-skills

GeoPandas extends pandas for geospatial vector data, enabling reading/writing shapefiles, GeoJSON, GeoPackage and PostGIS, performing CRS management, spatial joins, overlays, buffering, area/distance calculations, and producing static or interactive choropleth maps.

Resource Detection For Science

get-available-resources

K-Dense-AI/claude-scientific-skills

Detects system CPU, GPU, memory, and disk availability before heavy scientific tasks, writing `.claude_resources.json` with strategic recommendations (parallelism, out-of-core, GPU acceleration) so analysts choose appropriate compute approaches.

Latch Bioinformatics Workflows

latchbio-integration

K-Dense-AI/claude-scientific-skills

LatchBio Integration provides a Python-first platform to compose, deploy, and monitor serverless bioinformatics pipelines with the Latch SDK, decorator-based tasks, cloud storage (LatchFile/Dir), GPU tuning, and Nextflow or Snakemake interoperability.

Neuropixels Analysis Toolkit

neuropixels-analysis

K-Dense-AI/claude-scientific-skills

End-to-end Neuropixels recording analysis covering SpikeGLX/OpenEphys/NWB loading, preprocessing, motion correction, Kilosort4 sorting, quality metrics, Allen/IBL curation, and AI-assisted visualization for extracellular electrophysiology.

PubChem Database Query

pubchem-database

K-Dense-AI/claude-scientific-skills

Leverages PubChem’s PUG-REST API or PubChemPy to search 110M+ compounds by name, CID, or structure, fetch properties, perform similarity/substructure lookups, and access bioactivity or format conversions for cheminformatics workflows.

Materials Structure Toolkit

K-Dense-AI/claude-scientific-skills

A Python materials science library for constructing, analyzing, and converting crystal structures, computing phase diagrams and electronic properties, and integrating with the Materials Project API for high-throughput workflows.

Agency Research Grant Writing

research-grants

K-Dense-AI/claude-scientific-skills

Craft competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC by aligning narratives with agency review criteria, detailing budgets, personnel plans, and broader impacts, and incorporating required AI-generated schematics via the scientific-schematics skill.

Supply Chain Risk Auditor

supply-chain-risk-auditor

trailofbits/skills

Systematically examines project dependencies, using GitHub data to highlight single-maintainer, unmaintained, unpopular, or otherwise risky packages before audits so teams can focus security efforts and propose better-maintained alternatives.

TileDB VCF Storage

K-Dense-AI/claude-scientific-skills

TileDB-VCF lets you ingest, store, query, and export large genomic VCF/BCF datasets using TileDB’s sparse arrays, supporting incremental sample growth, parallel regions queries, and cloud-local interoperability for population genomics workflows.

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