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Aeon Time Series ML

K-Dense-AI/claude-scientific-skills

Aeon is a scikit-learn compatible toolkit for time series machine learning, covering classification, regression, clustering, forecasting, anomaly detection, segmentation, similarity search, and feature extraction on temporal data.

Alpha Vantage Market Data

K-Dense-AI/claude-scientific-skills

Fetch real-time and historical equities, forex, crypto, commodities, and economic indicator data through the Alpha Vantage API, plus over 50 technical indicators for charting, research, and automation workflows once you provide an API key.

Annotated Data Matrix

K-Dense-AI/claude-scientific-skills

AnnData supplies a Python-native container for annotated matrices, letting researchers store measurements alongside rich metadata, read/write h5ad/zarr/loom/10X files, and integrate with the scverse tools when building single-cell or related data workflows.

Arboreto GRN Inference

K-Dense-AI/claude-scientific-skills

Arboreto infers gene regulatory networks from bulk or single-cell RNA-seq data using scalable GRNBoost2 and GENIE3 algorithms, letting researchers filter transcription-factor targets, run distributed Dask jobs, and export ranked links for downstream analysis.

Astropy Astronomy Toolkit

K-Dense-AI/claude-scientific-skills

Astropy is a Python library for astronomical research that handles unit-aware quantities, celestial coordinates, FITS files, cosmological models, precise time systems, and tabular data, letting you transform, convert, and analyze observational or theoretical datasets.

BGPT Structured Paper Search

bgpt-paper-search

K-Dense-AI/claude-scientific-skills

BGPT Paper Search queries the remote MCP server to retrieve structured experimental data from full-text studies, returning methods, results, sample sizes, quality scores, and conclusions for efficient literature reviews and evidence synthesis.

bioRxiv Preprint Search

biorxiv-database

K-Dense-AI/claude-scientific-skills

Enables efficient querying of the bioRxiv preprint server with keywords, authors, dates, and categories, returning structured JSON metadata and optional PDF downloads for literature reviews or tracking research trends.

BioServices Cross-DB API

K-Dense-AI/claude-scientific-skills

BioServices provides Python wrappers for 40+ bioinformatics services, allowing cross-database queries, identifier mapping, pathway exploration, and sequence or compound research within consistent workflows.

BRENDA Enzyme Explorer

brenda-database

K-Dense-AI/claude-scientific-skills

Access the BRENDA SOAP API to retrieve enzyme kinetic parameters, reaction equations, organism-specific data, and environmental preferences, enabling biochemical research, metabolic pathway reconstruction, and enzyme engineering workflows.

Clinical Decision Support Reports

clinical-decision-support

K-Dense-AI/claude-scientific-skills

Generates publication-ready clinical decision support documents for pharma and clinical research, covering biomarker-stratified cohort analysis, evidence-graded treatment recommendations, statistical comparisons, and regulatory-ready LaTeX/PDF outputs.

Clinical Trials Database

clinicaltrials-database

K-Dense-AI/claude-scientific-skills

Access the ClinicalTrials.gov API v2 to search trials by condition, drug, location, sponsor or status, fetch details via NCT ID, and export JSON/CSV data for research analysis, patient matching, and trial monitoring.

ClinVar Variant Explorer

clinvar-database

K-Dense-AI/claude-scientific-skills

Query NCBI ClinVar for variant clinical significance, mixing gene/condition searches, API/FTP downloads, and VCF annotations to support genomic medicine interpretation workflows.

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