pacsomatic
K-Dense-AI/scientific-agent-skills
A comprehensive workflow management skill for performing matched tumor-normal genomic analysis using nf-core/pacsomatic. This tool handles input validation, generates pacsomatic-compliant samplesheets and reproducible launch artifacts (params YAML, scripts), and manages execution across various environments, including local machines and cluster schedulers (Slurm, LSF, PBS). Ideal for preparing, running, and troubleshooting complex bioinformatics pipelines.
