Skill UI

A protocol that provides LLM agents with persistent structural memory of a codebase. It maps the project as a directed graph, tracking not only dependencies (what imports what) but also the 'reasons' (why it connects). This allows agents to understand context, perform impact analysis, and navigate large repositories without loading the entire source code into the context window.

This skill provides comprehensive capabilities for working with PowerPoint files (.pptx). It supports end-to-end workflows, including creating new presentations from scratch based on design principles, sophisticated content editing, and deep structural analysis. Users can extract plain text, access raw underlying XML (for notes, comments, and layouts), and apply expert design knowledge—such as selecting appropriate color palettes and establishing visual hierarchy—to ensure professional and effective presentations.

This tool rigorously validates API schemas against industry standards, including OpenAPI 3.0/3.1, JSON Schema, and GraphQL SDL. It performs structural analysis to detect incomplete schemas, inconsistent naming, undocumented endpoints, and critical breaking changes. Use it within your CI/CD pipeline to ensure API contracts are robust, compliant, and maintainable before release.

This skill simulates a senior documentation engineer, generating highly structured, evidence-based technical documentation. It processes codebases to create comprehensive wiki pages, mandating deep structural analysis, citing specific code paths (file:line), and incorporating mandatory architectural diagrams (Mermaid). Ideal for creating deep-dive system manuals, component guides, and technical deep dives with verifiable sources.

Retrieve AlphaFold’s AI-predicted protein models via UniProt IDs, download CIF/PDB coordinates, inspect confidence metrics, and feed them into structural analysis or drug-discovery pipelines.

Run OpenMM-powered molecular dynamics simulations and MDAnalysis trajectory workflows to build protein or small-molecule systems, minimize energy, equilibrate conditions, and characterize RMSD/RMSF, contacts, and free-energy surfaces for structural biology or drug studies.

This skill provides deep technical expertise regarding the DWARF debugging format (v3-v5) and the DWARF standard. It assists in analyzing, parsing, verifying, and generating debug information from compiled binaries. Use cases include answering questions about the DWARF specification, writing code that interacts with DWARF data, and utilizing tools like `dwarfdump` or `readelf` for structural validation and quality metric extraction.

Automates the static security analysis of Android APK/AAB files using the Mobile Security Framework (MobSF). This skill identifies critical vulnerabilities such as hardcoded secrets, insecure permissions, weak cryptography, and structural flaws (mapping to OWASP Mobile Top 10) without requiring application execution. It is essential for integrating security gates into CI/CD pipelines, performing pre-release quality assurance, and enhancing penetration testing coverage.

A comprehensive tool for managing website SEO sitemaps. It can validate existing XML sitemaps against Google's latest best practices, checking for broken URLs, outdated dates, and structural issues. Alternatively, it can guide the user through generating a new, optimized sitemap structure and XML file, ensuring all critical pages are indexed correctly for search engines.

Biopython is a comprehensive Python toolkit for computational molecular biology. It supports essential bioinformatics tasks, including sequence manipulation, file parsing (FASTA, GenBank, PDB), phylogenetic analysis, sequence alignment (BLAST/Multiple), and programmatic access to major databases like NCBI using Bio.Entrez. Ideal for building custom, robust bioinformatics pipelines and conducting research in genomics and structural biology.

gget is a comprehensive command-line and Python package providing unified access to over 20 major bioinformatics databases. Users can perform deep analyses across genomics, proteomics, and disease associations. Key functions include gene information lookups, sequence alignment (BLAST), structural prediction (AlphaFold), single-cell analysis, and enrichment studies, supporting both interactive queries and automated pipelines.

A comprehensive toolkit for running and analyzing molecular dynamics (MD) simulations. This skill covers the entire workflow: system setup, force field definition, energy minimization, and equilibration using industry-standard tools like OpenMM and MDAnalysis. Essential for structural biology, drug binding studies, and biophysics research.