Skill UI

A comprehensive, scalable Python toolkit designed for end-to-end single-cell RNA-seq data analysis. It supports crucial steps including quality control (QC), normalization, dimensionality reduction (PCA, UMAP, t-SNE), cell clustering, and differential gene expression analysis. The skill provides ready-to-run scripts for analyzing various formats (e.g., .h5ad, 10X, R-native) and generating publication-quality visualizations and cell type annotations.

A powerful AI tool designed to transform complex scientific concepts into publication-quality visual schematics. Utilizing Nano Banana 2 AI for generation and Gemini 3.1 Pro Preview for rigorous quality review, the skill specializes in creating architectural diagrams, neural network structures, biological pathways, and complex flowcharts. It employs smart iterative refinement, ensuring the output meets predefined quality thresholds for academic journals, posters, and reports.

scikit-bio is a comprehensive Python library designed for advanced bioinformatics and biological data analysis. It provides robust capabilities for sequence manipulation (DNA, RNA, Protein), performing complex sequence alignments (pairwise and multiple), constructing and analyzing phylogenetic trees, and calculating diverse ecological metrics. It is essential for microbiome analysis, evolutionary studies, and general biological data processing, supporting standard formats like FASTA, Newick, and BIOM.

scikit-survival is a comprehensive Python library built on scikit-learn, designed for rigorous time-to-event analysis. It specializes in handling censored data (right, left, or interval-censored) and provides multiple advanced modeling techniques, including Cox proportional hazards models, Random Survival Forests, Gradient Boosting, and Survival SVMs. Users can evaluate model performance using metrics like the Concordance Index and Brier Score, making it ideal for clinical, reliability, and survival research.

scVelo is a powerful Python package designed for RNA velocity analysis using single-cell RNA-seq data. It estimates cell state transitions by modeling the kinetics of mRNA splicing—specifically using the ratio of unspliced to spliced mRNA abundances. This allows researchers to reconstruct developmental trajectories and predict cell fates, even when only snapshot data is available, making it a vital complement to standard trajectory inference tools like Scanpy.

SymPy is a powerful Python library designed for exact symbolic computation, allowing users to perform advanced mathematical operations without resorting to floating-point approximations. It provides comprehensive tools for symbolic algebra, differentiation, integration, solving complex equations (linear and non-linear), and handling linear algebra. It is essential for scientific computing, physics modeling, and advanced mathematical research, supporting multiple output formats like LaTeX.

TorchDrug is a comprehensive PyTorch-based ML toolbox designed for molecular and protein science. It leverages Graph Neural Networks (GNNs) to tackle complex tasks including molecular property prediction, protein structure modeling, drug-target binding prediction, knowledge graph reasoning, and de novo molecular generation. It provides robust capabilities for accelerating drug discovery research.

This tool automates the complete specification generation process across four core phases: Initialization, Requirements, Design, and Tasks. It supports both interactive (step-by-step approval) and automatic execution modes. After generating the full spec, it performs a final sanity review to ensure coherence and completeness, providing a ready-to-implement blueprint.

Implements an iterative development workflow using the Anima SDK. This tool allows developers to quickly generate, compare, and preview code outputs from Figma designs across multiple frameworks (React, Vue, HTML/CSS) in a local environment. Ideal for rapid prototyping, cross-framework comparison, and refining design-to-code implementation.

A comprehensive tool designed to collect all diagnostic evidence for troubleshooting failed or problematic Apify Actor runs. This bundle gathers run metadata, detailed logs, dataset samples, usage statistics, and environment information, making it essential for preparing detailed support tickets or performing in-depth debugging.

This skill integrates an AI agent (Clawdbot) with Signal, one of the most private messaging platforms. It enables automated communication by utilizing the signal-cli tool to perform actions such as sending messages, sending files, reacting, and replying within a designated chat channel. Ideal for building secure, automated bot interactions in private messaging environments.

A comprehensive tool designed to help developers gather all necessary evidence when facing persistent issues or API errors with Anthropic's Claude models. It collects vital data points such as the request ID, full error payloads, status codes, and provides reproducible cURL commands, ensuring developers can file high-quality support tickets.