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GWAS Catalog Access

K-Dense-AI/claude-scientific-skills

Query the NHGRI-EBI GWAS Catalog for SNP-trait associations, fetch study metadata, variant and trait details, and download summary statistics via the web or REST APIs to support genetic epidemiology and polygenic risk modeling.

KEGG REST Toolkit

K-Dense-AI/claude-scientific-skills

Direct Python helpers for KEGG's REST API, covering database metadata, listing, search, retrieval, ID conversion, linkage, and drug interactions to power pathway and gene analysis.

Metabolomics Workbench API

metabolomics-workbench-database

K-Dense-AI/claude-scientific-skills

Query the NIH Metabolomics Workbench via REST API to fetch metabolites, RefMet nomenclature, mass-spec searches, and detailed study datasets for biomarker discovery and metabolomics research.

PubChem Database Query

pubchem-database

K-Dense-AI/claude-scientific-skills

Leverages PubChem’s PUG-REST API or PubChemPy to search 110M+ compounds by name, CID, or structure, fetch properties, perform similarity/substructure lookups, and access bioactivity or format conversions for cheminformatics workflows.

PubMed Database Access

pubmed-database

K-Dense-AI/claude-scientific-skills

Direct REST/API access to PubMed for constructing complex Boolean or MeSH queries, filtering by publication attributes, and automating literature retrieval or citation management via NCBI’s E-utilities.

STRING Protein Interaction

string-database

K-Dense-AI/claude-scientific-skills

Query the STRING REST API to retrieve protein-protein interaction networks, map identifiers, visualize evidence-weighted edges, and run GO/KEGG/Pfam enrichment for systems biology analysis.

UniProt Rest Access

uniprot-database

K-Dense-AI/claude-scientific-skills

Direct REST API access to UniProt for searching proteins, fetching FASTA sequences, mapping identifiers, selecting annotations, and streaming large datasets within Python workflows.

US Treasury Fiscal API

K-Dense-AI/claude-scientific-skills

Provides open REST access to the U.S. Treasury Fiscal Data API so analysts can pull national debt, spending, revenue, interest rates, exchange rates, auctions, and savings bond statistics without an API key; useful for financial dashboards, debt tracking, and research involving federal fiscal metrics.

BindingDB Affinity Access

bindingdb-database

K-Dense-AI/claude-scientific-skills

Query BindingDB for measured drug-target affinities (Ki, Kd, IC50, EC50) via REST endpoints or downloaded TSVs to support target-centric drug discovery, SAR analysis, lead profiling, and benchmarking datasets.

cBioPortal Cancer Data

cbioportal-database

K-Dense-AI/claude-scientific-skills

Access multi-dimensional cancer genomics data via cBioPortal REST API for mutation, copy-number, expression, and survival insights across TCGA/GENIE studies, enabling target validation and clinical association analyses programmatically with Python clients.

InterPro Protein Annotation

interpro-database

K-Dense-AI/claude-scientific-skills

Query InterPro for protein family, domain, and GO annotations via a REST API with Python helpers, enabling function prediction, domain architecture mapping, and evolutionary classification insights for proteomic workflows.

Jaspar TFBS Toolkit

jaspar-database

K-Dense-AI/claude-scientific-skills

Query the JASPAR REST API and Python helpers to retrieve TF binding profiles, convert PFMs to PWMs, and scan DNA sequences for high-confidence motifs, enabling regulatory variant interpretation, ChIP/ATAC analysis, and TF network construction.

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