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Datamol Cheminformatics Helper

K-Dense-AI/scientific-agent-skills

Datamol wraps RDKit with Pythonic APIs tailored for drug discovery, offering SMILES/SELFIES/InChI parsing, standardization, descriptor and fingerprint calculation, clustering, 3D conformer workflows, and parallel/cloud-aware batch I/O while returning native rdkit.Chem.Mol objects.

DNAnexus Cloud Genomics

dnanexus-integration

K-Dense-AI/scientific-agent-skills

Integrate with the DNAnexus cloud genomics platform to build apps/applets, manage FASTQ/BAM/VCF data, run workflows, and script automations via dxpy for biomedical pipelines.

Phylogenetic Tree Toolkit

K-Dense-AI/scientific-agent-skills

A toolkit for phylogenetic tree manipulation, event detection, NCBI taxonomy integration, and publication-quality visualization, streamlining phylogenomics workflows and gene family analysis.

Unified Bioinformatics Query

K-Dense-AI/scientific-agent-skills

gget is a CLI/Python client that unifies querying over 20+ bioinformatics databases, letting researchers fetch gene info, sequences, BLAST results, structures, and enrichment data interactively or within scripts.

Scientific Hypothesis Formulation

hypothesis-generation

K-Dense-AI/scientific-agent-skills

Guides structured hypothesis generation by combining literature searches, evidence synthesis, competing explanations, and experimental design, with mandatory AI-generated scientific schematics for complete reports.

Art-Directed Frontend UI Design Generation

image-taste-frontend

Leonxlnx/taste-skill

This skill acts as an elite Art Director for generating premium, highly actionable, and structurally sound frontend design references. It moves beyond generic AI aesthetics by enforcing principles like strong hierarchy, generous spacing, and image-led composition. Ideal for creating realistic, development-ready concepts for landing pages, hero sections, and multi-section websites.

Smart Infographic Generator

K-Dense-AI/scientific-agent-skills

Generates professional infographics by describing your idea, combining Nano Banana Pro AI generation with Gemini 3 Pro quality review and optional Perplexity Sonar research to ensure accurate, publication-ready visuals for marketing, reports, social, or internal use.

Latch Bioinformatics Workflows

latchbio-integration

K-Dense-AI/scientific-agent-skills

LatchBio Integration provides a Python-first platform to compose, deploy, and monitor serverless bioinformatics pipelines with the Latch SDK, decorator-based tasks, cloud storage (LatchFile/Dir), GPU tuning, and Nextflow or Snakemake interoperability.

LaTeX Poster Crafting

K-Dense-AI/scientific-agent-skills

Guides researchers through creating conference-ready posters in LaTeX, covering layouts, visuals, AI-generated graphics, and overflow-safe design for academic communication.

MATLAB Octave Essentials

K-Dense-AI/scientific-agent-skills

Offers MATLAB and GNU Octave guidance for matrix math, data import/export, visualizations, statistics, signal processing, differential equations, and general scripting—helpful when writing or translating MATLAB/Octave code and running scripts under either interpreter.

Medchem Filtering Toolkit

K-Dense-AI/scientific-agent-skills

Medchem Filtering Toolkit is a Python library offering drug-likeness heuristics, structural alert and PAINS filters, group detection, catalogs, and complexity scoring to triage compound libraries and prioritize leads in drug discovery workflows.

Molecular Dynamics Toolkit

molecular-dynamics

K-Dense-AI/scientific-agent-skills

Run OpenMM-powered molecular dynamics simulations and MDAnalysis trajectory workflows to build protein or small-molecule systems, minimize energy, equilibrate conditions, and characterize RMSD/RMSF, contacts, and free-energy surfaces for structural biology or drug studies.

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