Skill UI

Automates generating TorchServe deployment configurations with guided best practices for model serving, MLOps pipelines, inference, and production monitoring so ML deployment workflows stay consistent and reliable.

Automates Triton inference config guidance for ML deployment, covering serving, MLOps pipelines, monitoring, and production-ready configurations aligned with best practices.

This comprehensive workflow guides users through the end-to-end process of utilizing cloud-based GPU computing resources on Vast.ai. It covers searching for ideal GPU offers based on specs and price, provisioning an instance, running complex training or inference jobs via SSH, collecting model artifacts, and crucially, destroying the instance to prevent unexpected billing. Ideal for deep learning training and research.

This comprehensive script suite provides methods to optimize GPU cloud computing expenses on Vast.ai. It guides users through selecting the most cost-efficient GPU for their workload, leveraging interruptible (spot) instances, and implementing critical lifecycle management safeguards. Features include detecting idle compute resources, auto-destroy timers, and calculating total cost burn rates, ensuring AI model training and inference jobs stay within budget.

A comprehensive guide for deploying Machine Learning training jobs and inference services on the Vast.ai GPU cloud. This skill covers the entire deployment lifecycle, including optimizing Docker images for performance, creating automated provisioning scripts using the Vast.ai CLI, implementing robust data transfer strategies (SCP, rsync), and performing post-deployment health checks.

Arboreto infers gene regulatory networks from bulk or single-cell RNA-seq data using scalable GRNBoost2 and GENIE3 algorithms, letting researchers filter transcription-factor targets, run distributed Dask jobs, and export ranked links for downstream analysis.

Combines ESM3 and ESM C protein language models to generate sequences, predict structures, condition functions, and extract embeddings via local or Forge API inference for protein design and engineering workflows.

Structured workflow for building hierarchical Bayesian models with PyMC 5+, covering data prep, NUTS sampling, diagnostics, posterior checks, and predictive inference.

Statsmodels is a comprehensive Python library dedicated to advanced statistical modeling and econometrics. It provides tools for rigorous statistical inference, including Ordinary Least Squares (OLS), Generalized Linear Models (GLM), mixed-effects models, and time series analysis (ARIMA). Use this skill for detailed diagnostics, coefficient estimation, hypothesis testing, and producing publication-ready statistical reports in fields like econometrics and biostatistics.

Provide a comprehensive toolkit for RNA velocity inference in single-cell RNA-seq data, modeling unspliced/spliced kinetics to infer differentiation directions, latent time, and driver genes while complementing Scanpy pipelines.

A comprehensive toolkit for reconstructing and analyzing the evolutionary history of biological sequences (genes, proteins, genomes). The standard workflow includes multiple sequence alignment using MAFFT, robust maximum likelihood tree inference with IQ-TREE 2 and FastTree, and advanced visualization/manipulation using ETE3. This skill is essential for studies in viral phylodynamics, microbial genomics, protein family evolution, and molecular clock dating.

PyMC is a powerful Python library for probabilistic programming and advanced Bayesian inference. This comprehensive guide details the full workflow for building, fitting, and validating complex Bayesian models. Learn to implement hierarchical structures, perform MCMC sampling (NUTS), conduct posterior predictive checks (PPC), and effectively quantify uncertainty using industry best practices.